miRNA display CGI


Results 21 - 38 of 38 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13092 3' -58.8 NC_003401.1 + 94058 0.68 0.578816
Target:  5'- gCAGGCCAcGCGGGCGAGUuauauucgAGaCUUGCUc -3'
miRNA:   3'- -GUCCGGU-CGCUCGUUCG--------UCcGGAUGA- -5'
13092 3' -58.8 NC_003401.1 + 98127 0.72 0.380734
Target:  5'- aAGGCCAgGCucGCGAGCuguGGCCUAUc -3'
miRNA:   3'- gUCCGGU-CGcuCGUUCGu--CCGGAUGa -5'
13092 3' -58.8 NC_003401.1 + 98287 0.66 0.71236
Target:  5'- aUAGGCCacAGCucGCGAGCcuGGCCUuaACg -3'
miRNA:   3'- -GUCCGG--UCGcuCGUUCGu-CCGGA--UGa -5'
13092 3' -58.8 NC_003401.1 + 98995 0.75 0.250954
Target:  5'- aGGGCCAGCGAGCGucugauaggGGCuAGGUCU-CUg -3'
miRNA:   3'- gUCCGGUCGCUCGU---------UCG-UCCGGAuGA- -5'
13092 3' -58.8 NC_003401.1 + 104550 0.66 0.702254
Target:  5'- aUAGGCacaaaacuCAGCGAGCuu-CAGGCgUACa -3'
miRNA:   3'- -GUCCG--------GUCGCUCGuucGUCCGgAUGa -5'
13092 3' -58.8 NC_003401.1 + 122535 0.66 0.71236
Target:  5'- --cGCCGGCGAcaagGUAAGgGGGCCgcgGCg -3'
miRNA:   3'- gucCGGUCGCU----CGUUCgUCCGGa--UGa -5'
13092 3' -58.8 NC_003401.1 + 132456 0.71 0.432914
Target:  5'- gAGGCCGGCGgcgcccGGCGcGCGGGCCcgggggGCg -3'
miRNA:   3'- gUCCGGUCGC------UCGUuCGUCCGGa-----UGa -5'
13092 3' -58.8 NC_003401.1 + 132490 0.67 0.651001
Target:  5'- cCGGGCCGGCGGGgcGGaGGGCCg--- -3'
miRNA:   3'- -GUCCGGUCGCUCguUCgUCCGGauga -5'
13092 3' -58.8 NC_003401.1 + 132844 0.7 0.469925
Target:  5'- gUAGGCCuGCuuGCucGCuGGCCUGCUu -3'
miRNA:   3'- -GUCCGGuCGcuCGuuCGuCCGGAUGA- -5'
13092 3' -58.8 NC_003401.1 + 132908 0.7 0.469925
Target:  5'- gUAGGCCuGCuuGCucGCuGGCCUGCUu -3'
miRNA:   3'- -GUCCGGuCGcuCGuuCGuCCGGAUGA- -5'
13092 3' -58.8 NC_003401.1 + 132962 0.9 0.024068
Target:  5'- gCAGGCCAGCGAGCAGGCAGGCa---- -3'
miRNA:   3'- -GUCCGGUCGCUCGUUCGUCCGgauga -5'
13092 3' -58.8 NC_003401.1 + 133002 1.07 0.001347
Target:  5'- gCAGGCCAGCGAGCAAGCAGGCCUACUg -3'
miRNA:   3'- -GUCCGGUCGCUCGUUCGUCCGGAUGA- -5'
13092 3' -58.8 NC_003401.1 + 133066 1.07 0.001347
Target:  5'- gCAGGCCAGCGAGCAAGCAGGCCUACUg -3'
miRNA:   3'- -GUCCGGUCGCUCGUUCGUCCGGAUGA- -5'
13092 3' -58.8 NC_003401.1 + 133142 0.91 0.019812
Target:  5'- gCAGGCCAGCGAGCAagcaAGCAGGCCaGCg -3'
miRNA:   3'- -GUCCGGUCGCUCGU----UCGUCCGGaUGa -5'
13092 3' -58.8 NC_003401.1 + 133182 0.91 0.019812
Target:  5'- gCAGGCCAGCGAGCAagcaAGCAGGCCaGCg -3'
miRNA:   3'- -GUCCGGUCGCUCGU----UCGUCCGGaUGa -5'
13092 3' -58.8 NC_003401.1 + 133222 0.91 0.019812
Target:  5'- gCAGGCCAGCGAGCAagcaAGCAGGCCaGCg -3'
miRNA:   3'- -GUCCGGUCGCUCGU----UCGUCCGGaUGa -5'
13092 3' -58.8 NC_003401.1 + 133262 0.91 0.019812
Target:  5'- gCAGGCCAGCGAGCAagcaAGCAGGCCaGCg -3'
miRNA:   3'- -GUCCGGUCGCUCGU----UCGUCCGGaUGa -5'
13092 3' -58.8 NC_003401.1 + 133314 0.69 0.538255
Target:  5'- gCAGGCguaccguccccuUAGCaAGCAAGCAGcCCUACUg -3'
miRNA:   3'- -GUCCG------------GUCGcUCGUUCGUCcGGAUGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.