miRNA display CGI


Results 21 - 38 of 38 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13092 3' -58.8 NC_003401.1 + 75088 0.66 0.71236
Target:  5'- uGGGCgCuuGGCGGGCAGGCAGaGUUUAa- -3'
miRNA:   3'- gUCCG-G--UCGCUCGUUCGUC-CGGAUga -5'
13092 3' -58.8 NC_003401.1 + 98287 0.66 0.71236
Target:  5'- aUAGGCCacAGCucGCGAGCcuGGCCUuaACg -3'
miRNA:   3'- -GUCCGG--UCGcuCGUUCGu-CCGGA--UGa -5'
13092 3' -58.8 NC_003401.1 + 122535 0.66 0.71236
Target:  5'- --cGCCGGCGAcaagGUAAGgGGGCCgcgGCg -3'
miRNA:   3'- gucCGGUCGCU----CGUUCgUCCGGa--UGa -5'
13092 3' -58.8 NC_003401.1 + 227 0.9 0.024068
Target:  5'- gCAGGCCAGCGAGCAGGCAGGCa---- -3'
miRNA:   3'- -GUCCGGUCGCUCGUUCGUCCGgauga -5'
13092 3' -58.8 NC_003401.1 + 132962 0.9 0.024068
Target:  5'- gCAGGCCAGCGAGCAGGCAGGCa---- -3'
miRNA:   3'- -GUCCGGUCGCUCGUUCGUCCGgauga -5'
13092 3' -58.8 NC_003401.1 + 133066 1.07 0.001347
Target:  5'- gCAGGCCAGCGAGCAAGCAGGCCUACUg -3'
miRNA:   3'- -GUCCGGUCGCUCGUUCGUCCGGAUGA- -5'
13092 3' -58.8 NC_003401.1 + 133002 1.07 0.001347
Target:  5'- gCAGGCCAGCGAGCAAGCAGGCCUACUg -3'
miRNA:   3'- -GUCCGGUCGCUCGUUCGUCCGGAUGA- -5'
13092 3' -58.8 NC_003401.1 + 331 1.07 0.001347
Target:  5'- gCAGGCCAGCGAGCAAGCAGGCCUACUg -3'
miRNA:   3'- -GUCCGGUCGCUCGUUCGUCCGGAUGA- -5'
13092 3' -58.8 NC_003401.1 + 267 1.07 0.001347
Target:  5'- gCAGGCCAGCGAGCAAGCAGGCCUACUg -3'
miRNA:   3'- -GUCCGGUCGCUCGUUCGUCCGGAUGA- -5'
13092 3' -58.8 NC_003401.1 + 133262 0.91 0.019812
Target:  5'- gCAGGCCAGCGAGCAagcaAGCAGGCCaGCg -3'
miRNA:   3'- -GUCCGGUCGCUCGU----UCGUCCGGaUGa -5'
13092 3' -58.8 NC_003401.1 + 133222 0.91 0.019812
Target:  5'- gCAGGCCAGCGAGCAagcaAGCAGGCCaGCg -3'
miRNA:   3'- -GUCCGGUCGCUCGU----UCGUCCGGaUGa -5'
13092 3' -58.8 NC_003401.1 + 133182 0.91 0.019812
Target:  5'- gCAGGCCAGCGAGCAagcaAGCAGGCCaGCg -3'
miRNA:   3'- -GUCCGGUCGCUCGU----UCGUCCGGaUGa -5'
13092 3' -58.8 NC_003401.1 + 133142 0.91 0.019812
Target:  5'- gCAGGCCAGCGAGCAagcaAGCAGGCCaGCg -3'
miRNA:   3'- -GUCCGGUCGCUCGU----UCGUCCGGaUGa -5'
13092 3' -58.8 NC_003401.1 + 547 0.91 0.019812
Target:  5'- gCAGGCCAGCGAGCAagcaAGCAGGCCaGCg -3'
miRNA:   3'- -GUCCGGUCGCUCGU----UCGUCCGGaUGa -5'
13092 3' -58.8 NC_003401.1 + 507 0.91 0.019812
Target:  5'- gCAGGCCAGCGAGCAagcaAGCAGGCCaGCg -3'
miRNA:   3'- -GUCCGGUCGCUCGU----UCGUCCGGaUGa -5'
13092 3' -58.8 NC_003401.1 + 467 0.91 0.019812
Target:  5'- gCAGGCCAGCGAGCAagcaAGCAGGCCaGCg -3'
miRNA:   3'- -GUCCGGUCGCUCGU----UCGUCCGGaUGa -5'
13092 3' -58.8 NC_003401.1 + 427 0.91 0.019812
Target:  5'- gCAGGCCAGCGAGCAagcaAGCAGGCCaGCg -3'
miRNA:   3'- -GUCCGGUCGCUCGU----UCGUCCGGaUGa -5'
13092 3' -58.8 NC_003401.1 + 23240 0.66 0.736314
Target:  5'- cUAGGCCAGgGGGUuguugcccuguuuucGGGCAGGCg---- -3'
miRNA:   3'- -GUCCGGUCgCUCG---------------UUCGUCCGgauga -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.