Results 1 - 20 of 38 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
13092 | 3' | -58.8 | NC_003401.1 | + | 133066 | 1.07 | 0.001347 |
Target: 5'- gCAGGCCAGCGAGCAAGCAGGCCUACUg -3' miRNA: 3'- -GUCCGGUCGCUCGUUCGUCCGGAUGA- -5' |
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13092 | 3' | -58.8 | NC_003401.1 | + | 133002 | 1.07 | 0.001347 |
Target: 5'- gCAGGCCAGCGAGCAAGCAGGCCUACUg -3' miRNA: 3'- -GUCCGGUCGCUCGUUCGUCCGGAUGA- -5' |
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13092 | 3' | -58.8 | NC_003401.1 | + | 331 | 1.07 | 0.001347 |
Target: 5'- gCAGGCCAGCGAGCAAGCAGGCCUACUg -3' miRNA: 3'- -GUCCGGUCGCUCGUUCGUCCGGAUGA- -5' |
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13092 | 3' | -58.8 | NC_003401.1 | + | 267 | 1.07 | 0.001347 |
Target: 5'- gCAGGCCAGCGAGCAAGCAGGCCUACUg -3' miRNA: 3'- -GUCCGGUCGCUCGUUCGUCCGGAUGA- -5' |
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13092 | 3' | -58.8 | NC_003401.1 | + | 133222 | 0.91 | 0.019812 |
Target: 5'- gCAGGCCAGCGAGCAagcaAGCAGGCCaGCg -3' miRNA: 3'- -GUCCGGUCGCUCGU----UCGUCCGGaUGa -5' |
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13092 | 3' | -58.8 | NC_003401.1 | + | 133262 | 0.91 | 0.019812 |
Target: 5'- gCAGGCCAGCGAGCAagcaAGCAGGCCaGCg -3' miRNA: 3'- -GUCCGGUCGCUCGU----UCGUCCGGaUGa -5' |
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13092 | 3' | -58.8 | NC_003401.1 | + | 133182 | 0.91 | 0.019812 |
Target: 5'- gCAGGCCAGCGAGCAagcaAGCAGGCCaGCg -3' miRNA: 3'- -GUCCGGUCGCUCGU----UCGUCCGGaUGa -5' |
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13092 | 3' | -58.8 | NC_003401.1 | + | 133142 | 0.91 | 0.019812 |
Target: 5'- gCAGGCCAGCGAGCAagcaAGCAGGCCaGCg -3' miRNA: 3'- -GUCCGGUCGCUCGU----UCGUCCGGaUGa -5' |
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13092 | 3' | -58.8 | NC_003401.1 | + | 467 | 0.91 | 0.019812 |
Target: 5'- gCAGGCCAGCGAGCAagcaAGCAGGCCaGCg -3' miRNA: 3'- -GUCCGGUCGCUCGU----UCGUCCGGaUGa -5' |
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13092 | 3' | -58.8 | NC_003401.1 | + | 427 | 0.91 | 0.019812 |
Target: 5'- gCAGGCCAGCGAGCAagcaAGCAGGCCaGCg -3' miRNA: 3'- -GUCCGGUCGCUCGU----UCGUCCGGaUGa -5' |
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13092 | 3' | -58.8 | NC_003401.1 | + | 547 | 0.91 | 0.019812 |
Target: 5'- gCAGGCCAGCGAGCAagcaAGCAGGCCaGCg -3' miRNA: 3'- -GUCCGGUCGCUCGU----UCGUCCGGaUGa -5' |
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13092 | 3' | -58.8 | NC_003401.1 | + | 507 | 0.91 | 0.019812 |
Target: 5'- gCAGGCCAGCGAGCAagcaAGCAGGCCaGCg -3' miRNA: 3'- -GUCCGGUCGCUCGU----UCGUCCGGaUGa -5' |
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13092 | 3' | -58.8 | NC_003401.1 | + | 132962 | 0.9 | 0.024068 |
Target: 5'- gCAGGCCAGCGAGCAGGCAGGCa---- -3' miRNA: 3'- -GUCCGGUCGCUCGUUCGUCCGgauga -5' |
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13092 | 3' | -58.8 | NC_003401.1 | + | 227 | 0.9 | 0.024068 |
Target: 5'- gCAGGCCAGCGAGCAGGCAGGCa---- -3' miRNA: 3'- -GUCCGGUCGCUCGUUCGUCCGgauga -5' |
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13092 | 3' | -58.8 | NC_003401.1 | + | 387 | 0.78 | 0.155831 |
Target: 5'- gCAGGCCAGCGAGCAgcccuacuAGCAaGCCaGCa -3' miRNA: 3'- -GUCCGGUCGCUCGU--------UCGUcCGGaUGa -5' |
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13092 | 3' | -58.8 | NC_003401.1 | + | 98995 | 0.75 | 0.250954 |
Target: 5'- aGGGCCAGCGAGCGucugauaggGGCuAGGUCU-CUg -3' miRNA: 3'- gUCCGGUCGCUCGU---------UCG-UCCGGAuGA- -5' |
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13092 | 3' | -58.8 | NC_003401.1 | + | 98127 | 0.72 | 0.380734 |
Target: 5'- aAGGCCAgGCucGCGAGCuguGGCCUAUc -3' miRNA: 3'- gUCCGGU-CGcuCGUUCGu--CCGGAUGa -5' |
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13092 | 3' | -58.8 | NC_003401.1 | + | 132456 | 0.71 | 0.432914 |
Target: 5'- gAGGCCGGCGgcgcccGGCGcGCGGGCCcgggggGCg -3' miRNA: 3'- gUCCGGUCGC------UCGUuCGUCCGGa-----UGa -5' |
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13092 | 3' | -58.8 | NC_003401.1 | + | 173 | 0.7 | 0.469925 |
Target: 5'- gUAGGCCuGCuuGCucGCuGGCCUGCUu -3' miRNA: 3'- -GUCCGGuCGcuCGuuCGuCCGGAUGA- -5' |
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13092 | 3' | -58.8 | NC_003401.1 | + | 109 | 0.7 | 0.469925 |
Target: 5'- gUAGGCCuGCuuGCucGCuGGCCUGCUu -3' miRNA: 3'- -GUCCGGuCGcuCGuuCGuCCGGAUGA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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