miRNA display CGI


Results 1 - 20 of 44 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13093 3' -57.3 NC_003401.1 + 21828 0.66 0.807278
Target:  5'- uGGGCGGGgccgaccaCAGGCGcGGCCcggcuguuAGCGAGUAa -3'
miRNA:   3'- gCUCGUUC--------GUUCGU-CCGG--------UCGCUCGU- -5'
13093 3' -57.3 NC_003401.1 + 120701 0.66 0.801851
Target:  5'- -uGGCAAGCGccacugguucuuggcAGCcGGCCGGUGGGgAu -3'
miRNA:   3'- gcUCGUUCGU---------------UCGuCCGGUCGCUCgU- -5'
13093 3' -57.3 NC_003401.1 + 132402 0.66 0.797286
Target:  5'- cCGGGCGcaagauGGCGgccgcggcccggcGGCGGcGCCGGcCGGGCGc -3'
miRNA:   3'- -GCUCGU------UCGU-------------UCGUC-CGGUC-GCUCGU- -5'
13093 3' -57.3 NC_003401.1 + 126963 0.66 0.779592
Target:  5'- aGGGCAGG--GGCAGGaaCCGGUGGGUc -3'
miRNA:   3'- gCUCGUUCguUCGUCC--GGUCGCUCGu -5'
13093 3' -57.3 NC_003401.1 + 87311 0.66 0.770076
Target:  5'- uGAGgGAGCugacaccgccGAGCaAGGCCGG-GGGCGu -3'
miRNA:   3'- gCUCgUUCG----------UUCG-UCCGGUCgCUCGU- -5'
13093 3' -57.3 NC_003401.1 + 23213 0.66 0.770076
Target:  5'- uCGGGCAGGCGGGguGGUgAuuGCGAa-- -3'
miRNA:   3'- -GCUCGUUCGUUCguCCGgU--CGCUcgu -5'
13093 3' -57.3 NC_003401.1 + 16177 0.66 0.770076
Target:  5'- aCGGGUucacCGGGguGGCCAGCG-GCc -3'
miRNA:   3'- -GCUCGuuc-GUUCguCCGGUCGCuCGu -5'
13093 3' -57.3 NC_003401.1 + 116521 0.67 0.764305
Target:  5'- gGAGCcuuGGCAGGCAgucgcaccucugugcGGCUAGCuuGCGg -3'
miRNA:   3'- gCUCGu--UCGUUCGU---------------CCGGUCGcuCGU- -5'
13093 3' -57.3 NC_003401.1 + 92320 0.67 0.740803
Target:  5'- aCGA-CAGGCuaGAGCAGGCCGGgaCGGGgAa -3'
miRNA:   3'- -GCUcGUUCG--UUCGUCCGGUC--GCUCgU- -5'
13093 3' -57.3 NC_003401.1 + 94064 0.67 0.740803
Target:  5'- gGAG-----GAGCAGGCCAcGCGGGCGa -3'
miRNA:   3'- gCUCguucgUUCGUCCGGU-CGCUCGU- -5'
13093 3' -57.3 NC_003401.1 + 42426 0.67 0.730835
Target:  5'- uCGGGCAGGUGuuagcGUAGGCCAGCauugGAGa- -3'
miRNA:   3'- -GCUCGUUCGUu----CGUCCGGUCG----CUCgu -5'
13093 3' -57.3 NC_003401.1 + 12803 0.67 0.720779
Target:  5'- aCGAGCAGGCAacggacgaccuAGCGGcGCCccAGCu-GCAg -3'
miRNA:   3'- -GCUCGUUCGU-----------UCGUC-CGG--UCGcuCGU- -5'
13093 3' -57.3 NC_003401.1 + 78243 0.67 0.720779
Target:  5'- uCGGGUugcAGCGguGGCGGcGCCGGCaGGCAc -3'
miRNA:   3'- -GCUCGu--UCGU--UCGUC-CGGUCGcUCGU- -5'
13093 3' -57.3 NC_003401.1 + 94135 0.67 0.710643
Target:  5'- -aAGC-AGUugGAGCGGGCCGGUGcGCGg -3'
miRNA:   3'- gcUCGuUCG--UUCGUCCGGUCGCuCGU- -5'
13093 3' -57.3 NC_003401.1 + 119021 0.67 0.710643
Target:  5'- gCGuGCAccgaGGCGAGgAGGgCGGCGAuGCGc -3'
miRNA:   3'- -GCuCGU----UCGUUCgUCCgGUCGCU-CGU- -5'
13093 3' -57.3 NC_003401.1 + 22774 0.68 0.700439
Target:  5'- cCGAGCAcGGCGAGCguGGcGCUGGUG-GCAa -3'
miRNA:   3'- -GCUCGU-UCGUUCG--UC-CGGUCGCuCGU- -5'
13093 3' -57.3 NC_003401.1 + 27591 0.68 0.690175
Target:  5'- uCGAG-GGGCGGGCAcGcGCCAGCGcggggGGCAg -3'
miRNA:   3'- -GCUCgUUCGUUCGU-C-CGGUCGC-----UCGU- -5'
13093 3' -57.3 NC_003401.1 + 106874 0.68 0.669505
Target:  5'- gCGuuuGCGGGUuuGGCGGGuUCGGUGAGCAc -3'
miRNA:   3'- -GCu--CGUUCGu-UCGUCC-GGUCGCUCGU- -5'
13093 3' -57.3 NC_003401.1 + 132473 0.68 0.64871
Target:  5'- aGGGCcggGAGCcgGGGgAGGCCGGCG-GCGc -3'
miRNA:   3'- gCUCG---UUCG--UUCgUCCGGUCGCuCGU- -5'
13093 3' -57.3 NC_003401.1 + 86021 0.69 0.638287
Target:  5'- gGAGCAGGCuguGuCAaGCCAGgGGGCGc -3'
miRNA:   3'- gCUCGUUCGuu-C-GUcCGGUCgCUCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.