miRNA display CGI


Results 1 - 20 of 44 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13093 3' -57.3 NC_003401.1 + 133560 0.79 0.173835
Target:  5'- -aAGCAAGCAAGCAaGCCAGCaGGCAg -3'
miRNA:   3'- gcUCGUUCGUUCGUcCGGUCGcUCGU- -5'
13093 3' -57.3 NC_003401.1 + 133254 1.09 0.001541
Target:  5'- gCGAGCAAGCAAGCAGGCCAGCGAGCAa -3'
miRNA:   3'- -GCUCGUUCGUUCGUCCGGUCGCUCGU- -5'
13093 3' -57.3 NC_003401.1 + 133214 1.09 0.001541
Target:  5'- gCGAGCAAGCAAGCAGGCCAGCGAGCAa -3'
miRNA:   3'- -GCUCGUUCGUUCGUCCGGUCGCUCGU- -5'
13093 3' -57.3 NC_003401.1 + 133174 1.09 0.001541
Target:  5'- gCGAGCAAGCAAGCAGGCCAGCGAGCAa -3'
miRNA:   3'- -GCUCGUUCGUUCGUCCGGUCGCUCGU- -5'
13093 3' -57.3 NC_003401.1 + 133134 1.09 0.001541
Target:  5'- gCGAGCAAGCAAGCAGGCCAGCGAGCAg -3'
miRNA:   3'- -GCUCGUUCGUUCGUCCGGUCGCUCGU- -5'
13093 3' -57.3 NC_003401.1 + 133072 0.86 0.061259
Target:  5'- -----cAGCAAGCAGGCCAGCGAGCAa -3'
miRNA:   3'- gcucguUCGUUCGUCCGGUCGCUCGU- -5'
13093 3' -57.3 NC_003401.1 + 132994 0.87 0.049687
Target:  5'- gCGAGCaagcaGgccuacuguccccucAGCAAGCAGGCCAGCGAGCAg -3'
miRNA:   3'- -GCUCG-----U---------------UCGUUCGUCCGGUCGCUCGU- -5'
13093 3' -57.3 NC_003401.1 + 132508 0.72 0.456921
Target:  5'- gGGGCGGcggccGCGGGCccGGGCCGGCGGGgCGg -3'
miRNA:   3'- gCUCGUU-----CGUUCG--UCCGGUCGCUC-GU- -5'
13093 3' -57.3 NC_003401.1 + 132473 0.68 0.64871
Target:  5'- aGGGCcggGAGCcgGGGgAGGCCGGCG-GCGc -3'
miRNA:   3'- gCUCG---UUCG--UUCgUCCGGUCGCuCGU- -5'
13093 3' -57.3 NC_003401.1 + 132402 0.66 0.797286
Target:  5'- cCGGGCGcaagauGGCGgccgcggcccggcGGCGGcGCCGGcCGGGCGc -3'
miRNA:   3'- -GCUCGU------UCGU-------------UCGUC-CGGUC-GCUCGU- -5'
13093 3' -57.3 NC_003401.1 + 126963 0.66 0.779592
Target:  5'- aGGGCAGG--GGCAGGaaCCGGUGGGUc -3'
miRNA:   3'- gCUCGUUCguUCGUCC--GGUCGCUCGu -5'
13093 3' -57.3 NC_003401.1 + 122937 0.69 0.638287
Target:  5'- aGAGCGcaccgaaccguGGCAAGCGucGCCAGC-AGCAg -3'
miRNA:   3'- gCUCGU-----------UCGUUCGUc-CGGUCGcUCGU- -5'
13093 3' -57.3 NC_003401.1 + 120701 0.66 0.801851
Target:  5'- -uGGCAAGCGccacugguucuuggcAGCcGGCCGGUGGGgAu -3'
miRNA:   3'- gcUCGUUCGU---------------UCGuCCGGUCGCUCgU- -5'
13093 3' -57.3 NC_003401.1 + 119021 0.67 0.710643
Target:  5'- gCGuGCAccgaGGCGAGgAGGgCGGCGAuGCGc -3'
miRNA:   3'- -GCuCGU----UCGUUCgUCCgGUCGCU-CGU- -5'
13093 3' -57.3 NC_003401.1 + 116521 0.67 0.764305
Target:  5'- gGAGCcuuGGCAGGCAgucgcaccucugugcGGCUAGCuuGCGg -3'
miRNA:   3'- gCUCGu--UCGUUCGU---------------CCGGUCGcuCGU- -5'
13093 3' -57.3 NC_003401.1 + 109853 0.7 0.562562
Target:  5'- gGGGCAAaCGGGUAGGCCAGUcucucuaguuugugGAGCc -3'
miRNA:   3'- gCUCGUUcGUUCGUCCGGUCG--------------CUCGu -5'
13093 3' -57.3 NC_003401.1 + 106874 0.68 0.669505
Target:  5'- gCGuuuGCGGGUuuGGCGGGuUCGGUGAGCAc -3'
miRNA:   3'- -GCu--CGUUCGu-UCGUCC-GGUCGCUCGU- -5'
13093 3' -57.3 NC_003401.1 + 96395 0.76 0.253343
Target:  5'- uGGGCGGGCAAaggcucgucgcGCAGGCUGGaCGGGCAu -3'
miRNA:   3'- gCUCGUUCGUU-----------CGUCCGGUC-GCUCGU- -5'
13093 3' -57.3 NC_003401.1 + 94135 0.67 0.710643
Target:  5'- -aAGC-AGUugGAGCGGGCCGGUGcGCGg -3'
miRNA:   3'- gcUCGuUCG--UUCGUCCGGUCGCuCGU- -5'
13093 3' -57.3 NC_003401.1 + 94064 0.67 0.740803
Target:  5'- gGAG-----GAGCAGGCCAcGCGGGCGa -3'
miRNA:   3'- gCUCguucgUUCGUCCGGU-CGCUCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.