Results 1 - 20 of 28 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
13094 | 3' | -57.3 | NC_003401.1 | + | 120567 | 0.66 | 0.781887 |
Target: 5'- -uGCAGuuCAGCCCUGcCUGUUCCCg-- -3' miRNA: 3'- uuCGUUc-GUCGGGAU-GACAGGGGagu -5' |
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13094 | 3' | -57.3 | NC_003401.1 | + | 68990 | 0.66 | 0.762651 |
Target: 5'- cGGgAAGCAGCCU---UGUCCCCg-- -3' miRNA: 3'- uUCgUUCGUCGGGaugACAGGGGagu -5' |
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13094 | 3' | -57.3 | NC_003401.1 | + | 1056 | 0.66 | 0.761676 |
Target: 5'- uAGCAacaaaccAGCAGCCCUACUGUUuuUn-- -3' miRNA: 3'- uUCGU-------UCGUCGGGAUGACAGggGagu -5' |
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13094 | 3' | -57.3 | NC_003401.1 | + | 132949 | 0.67 | 0.722797 |
Target: 5'- cAGGCAGGCAGCCgUACccggUGUCUCa-CAa -3' miRNA: 3'- -UUCGUUCGUCGGgAUG----ACAGGGgaGU- -5' |
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13094 | 3' | -57.3 | NC_003401.1 | + | 214 | 0.67 | 0.722797 |
Target: 5'- cAGGCAGGCAGCCgUACccggUGUCUCa-CAa -3' miRNA: 3'- -UUCGUUCGUCGGgAUG----ACAGGGgaGU- -5' |
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13094 | 3' | -57.3 | NC_003401.1 | + | 117958 | 0.67 | 0.702337 |
Target: 5'- uGGCGcGCGGCCCccACcGUCCCCa-- -3' miRNA: 3'- uUCGUuCGUCGGGa-UGaCAGGGGagu -5' |
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13094 | 3' | -57.3 | NC_003401.1 | + | 93090 | 0.67 | 0.692009 |
Target: 5'- cAAGCugGCGGCCCUgguguguagcaGCUcGUCCCUg-- -3' miRNA: 3'- -UUCGuuCGUCGGGA-----------UGA-CAGGGGagu -5' |
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13094 | 3' | -57.3 | NC_003401.1 | + | 133348 | 0.68 | 0.668071 |
Target: 5'- uAGCAgcccAGCAGCCCUACuaucaagccaUcaggcaggcguaccGUCCCCUUAg -3' miRNA: 3'- uUCGU----UCGUCGGGAUG----------A--------------CAGGGGAGU- -5' |
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13094 | 3' | -57.3 | NC_003401.1 | + | 633 | 0.68 | 0.668071 |
Target: 5'- uAGCAgcccAGCAGCCCUACuaucaagccaUcaggcaggcguaccGUCCCCUUAg -3' miRNA: 3'- uUCGU----UCGUCGGGAUG----------A--------------CAGGGGAGU- -5' |
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13094 | 3' | -57.3 | NC_003401.1 | + | 105848 | 0.68 | 0.650267 |
Target: 5'- -uGC-AGUAGCCCguggGCUGUCCguaCUCGu -3' miRNA: 3'- uuCGuUCGUCGGGa---UGACAGGg--GAGU- -5' |
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13094 | 3' | -57.3 | NC_003401.1 | + | 119343 | 0.7 | 0.545997 |
Target: 5'- -cGCAaauggaaaaGGCGGCCCUGgUcagCCCCUCAa -3' miRNA: 3'- uuCGU---------UCGUCGGGAUgAca-GGGGAGU- -5' |
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13094 | 3' | -57.3 | NC_003401.1 | + | 915 | 0.7 | 0.535793 |
Target: 5'- uGGCcGGCAGCCCUACucUGUUCUCcCAg -3' miRNA: 3'- uUCGuUCGUCGGGAUG--ACAGGGGaGU- -5' |
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13094 | 3' | -57.3 | NC_003401.1 | + | 133630 | 0.7 | 0.535793 |
Target: 5'- uGGCcGGCAGCCCUACucUGUUCUCcCAg -3' miRNA: 3'- uUCGuUCGUCGGGAUG--ACAGGGGaGU- -5' |
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13094 | 3' | -57.3 | NC_003401.1 | + | 84586 | 0.7 | 0.525656 |
Target: 5'- uAAGCAAGCAGCUCUAuuuCUG-CCacuuCCUCAu -3' miRNA: 3'- -UUCGUUCGUCGGGAU---GACaGG----GGAGU- -5' |
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13094 | 3' | -57.3 | NC_003401.1 | + | 133544 | 0.72 | 0.40224 |
Target: 5'- cAGCAGGCAGCCCUACUagcagCCCagCAg -3' miRNA: 3'- uUCGUUCGUCGGGAUGAca---GGGgaGU- -5' |
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13094 | 3' | -57.3 | NC_003401.1 | + | 829 | 0.72 | 0.40224 |
Target: 5'- cAGCAGGCAGCCCUACUagcagCCCagCAg -3' miRNA: 3'- uUCGUUCGUCGGGAUGAca---GGGgaGU- -5' |
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13094 | 3' | -57.3 | NC_003401.1 | + | 109368 | 0.73 | 0.393519 |
Target: 5'- uAGGCAAGCGGCCCgagGCcaUCCCC-CAa -3' miRNA: 3'- -UUCGUUCGUCGGGa--UGacAGGGGaGU- -5' |
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13094 | 3' | -57.3 | NC_003401.1 | + | 1026 | 0.74 | 0.328314 |
Target: 5'- cAGCAAGCaaucAGCCUUACUGuuUCCCCUg- -3' miRNA: 3'- uUCGUUCG----UCGGGAUGAC--AGGGGAgu -5' |
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13094 | 3' | -57.3 | NC_003401.1 | + | 133032 | 0.95 | 0.011806 |
Target: 5'- nAGCAAGCAGgCCUACUGUCCCCUCAg -3' miRNA: 3'- uUCGUUCGUCgGGAUGACAGGGGAGU- -5' |
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13094 | 3' | -57.3 | NC_003401.1 | + | 297 | 0.95 | 0.011806 |
Target: 5'- nAGCAAGCAGgCCUACUGUCCCCUCAg -3' miRNA: 3'- uUCGUUCGUCgGGAUGACAGGGGAGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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