miRNA display CGI


Results 1 - 20 of 28 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13094 3' -57.3 NC_003401.1 + 120567 0.66 0.781887
Target:  5'- -uGCAGuuCAGCCCUGcCUGUUCCCg-- -3'
miRNA:   3'- uuCGUUc-GUCGGGAU-GACAGGGGagu -5'
13094 3' -57.3 NC_003401.1 + 68990 0.66 0.762651
Target:  5'- cGGgAAGCAGCCU---UGUCCCCg-- -3'
miRNA:   3'- uUCgUUCGUCGGGaugACAGGGGagu -5'
13094 3' -57.3 NC_003401.1 + 1056 0.66 0.761676
Target:  5'- uAGCAacaaaccAGCAGCCCUACUGUUuuUn-- -3'
miRNA:   3'- uUCGU-------UCGUCGGGAUGACAGggGagu -5'
13094 3' -57.3 NC_003401.1 + 132949 0.67 0.722797
Target:  5'- cAGGCAGGCAGCCgUACccggUGUCUCa-CAa -3'
miRNA:   3'- -UUCGUUCGUCGGgAUG----ACAGGGgaGU- -5'
13094 3' -57.3 NC_003401.1 + 214 0.67 0.722797
Target:  5'- cAGGCAGGCAGCCgUACccggUGUCUCa-CAa -3'
miRNA:   3'- -UUCGUUCGUCGGgAUG----ACAGGGgaGU- -5'
13094 3' -57.3 NC_003401.1 + 117958 0.67 0.702337
Target:  5'- uGGCGcGCGGCCCccACcGUCCCCa-- -3'
miRNA:   3'- uUCGUuCGUCGGGa-UGaCAGGGGagu -5'
13094 3' -57.3 NC_003401.1 + 93090 0.67 0.692009
Target:  5'- cAAGCugGCGGCCCUgguguguagcaGCUcGUCCCUg-- -3'
miRNA:   3'- -UUCGuuCGUCGGGA-----------UGA-CAGGGGagu -5'
13094 3' -57.3 NC_003401.1 + 133348 0.68 0.668071
Target:  5'- uAGCAgcccAGCAGCCCUACuaucaagccaUcaggcaggcguaccGUCCCCUUAg -3'
miRNA:   3'- uUCGU----UCGUCGGGAUG----------A--------------CAGGGGAGU- -5'
13094 3' -57.3 NC_003401.1 + 633 0.68 0.668071
Target:  5'- uAGCAgcccAGCAGCCCUACuaucaagccaUcaggcaggcguaccGUCCCCUUAg -3'
miRNA:   3'- uUCGU----UCGUCGGGAUG----------A--------------CAGGGGAGU- -5'
13094 3' -57.3 NC_003401.1 + 105848 0.68 0.650267
Target:  5'- -uGC-AGUAGCCCguggGCUGUCCguaCUCGu -3'
miRNA:   3'- uuCGuUCGUCGGGa---UGACAGGg--GAGU- -5'
13094 3' -57.3 NC_003401.1 + 119343 0.7 0.545997
Target:  5'- -cGCAaauggaaaaGGCGGCCCUGgUcagCCCCUCAa -3'
miRNA:   3'- uuCGU---------UCGUCGGGAUgAca-GGGGAGU- -5'
13094 3' -57.3 NC_003401.1 + 133630 0.7 0.535793
Target:  5'- uGGCcGGCAGCCCUACucUGUUCUCcCAg -3'
miRNA:   3'- uUCGuUCGUCGGGAUG--ACAGGGGaGU- -5'
13094 3' -57.3 NC_003401.1 + 915 0.7 0.535793
Target:  5'- uGGCcGGCAGCCCUACucUGUUCUCcCAg -3'
miRNA:   3'- uUCGuUCGUCGGGAUG--ACAGGGGaGU- -5'
13094 3' -57.3 NC_003401.1 + 84586 0.7 0.525656
Target:  5'- uAAGCAAGCAGCUCUAuuuCUG-CCacuuCCUCAu -3'
miRNA:   3'- -UUCGUUCGUCGGGAU---GACaGG----GGAGU- -5'
13094 3' -57.3 NC_003401.1 + 133544 0.72 0.40224
Target:  5'- cAGCAGGCAGCCCUACUagcagCCCagCAg -3'
miRNA:   3'- uUCGUUCGUCGGGAUGAca---GGGgaGU- -5'
13094 3' -57.3 NC_003401.1 + 829 0.72 0.40224
Target:  5'- cAGCAGGCAGCCCUACUagcagCCCagCAg -3'
miRNA:   3'- uUCGUUCGUCGGGAUGAca---GGGgaGU- -5'
13094 3' -57.3 NC_003401.1 + 109368 0.73 0.393519
Target:  5'- uAGGCAAGCGGCCCgagGCcaUCCCC-CAa -3'
miRNA:   3'- -UUCGUUCGUCGGGa--UGacAGGGGaGU- -5'
13094 3' -57.3 NC_003401.1 + 1026 0.74 0.328314
Target:  5'- cAGCAAGCaaucAGCCUUACUGuuUCCCCUg- -3'
miRNA:   3'- uUCGUUCG----UCGGGAUGAC--AGGGGAgu -5'
13094 3' -57.3 NC_003401.1 + 133032 0.95 0.011806
Target:  5'- nAGCAAGCAGgCCUACUGUCCCCUCAg -3'
miRNA:   3'- uUCGUUCGUCgGGAUGACAGGGGAGU- -5'
13094 3' -57.3 NC_003401.1 + 297 0.95 0.011806
Target:  5'- nAGCAAGCAGgCCUACUGUCCCCUCAg -3'
miRNA:   3'- uUCGUUCGUCgGGAUGACAGGGGAGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.