miRNA display CGI


Results 1 - 20 of 38 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13094 5' -57.6 NC_003401.1 + 12445 0.66 0.786645
Target:  5'- uGUGAGCAcGCGGGCgccgAGGCCGuuuucgguuuucuccGCGAc -3'
miRNA:   3'- uCGCUCGUuCGUUCG----UCCGGU---------------CGCUc -5'
13094 5' -57.6 NC_003401.1 + 7424 0.66 0.782901
Target:  5'- gGGCGAGaaaGAcGCGGcGUAGGCCAGgUGAu -3'
miRNA:   3'- -UCGCUCg--UU-CGUU-CGUCCGGUC-GCUc -5'
13094 5' -57.6 NC_003401.1 + 57742 0.66 0.782901
Target:  5'- cGGCGAGCGGGUAuaccugGGC-GGCCAuUGAu -3'
miRNA:   3'- -UCGCUCGUUCGU------UCGuCCGGUcGCUc -5'
13094 5' -57.6 NC_003401.1 + 64314 0.66 0.763861
Target:  5'- cGGC-AGCAuccuGgGAGU-GGCCGGCGGGg -3'
miRNA:   3'- -UCGcUCGUu---CgUUCGuCCGGUCGCUC- -5'
13094 5' -57.6 NC_003401.1 + 92320 0.66 0.754155
Target:  5'- -aCGA-CAGGCuaGAGCAGGCCGGgaCGGGg -3'
miRNA:   3'- ucGCUcGUUCG--UUCGUCCGGUC--GCUC- -5'
13094 5' -57.6 NC_003401.1 + 132451 0.66 0.754155
Target:  5'- cGGCG-GCGcccGGCGcGCGGGCCcGgGGGg -3'
miRNA:   3'- -UCGCuCGU---UCGUuCGUCCGGuCgCUC- -5'
13094 5' -57.6 NC_003401.1 + 86874 0.66 0.750241
Target:  5'- uGCGAGUuugccaGGGCAGauuuGCAGGCCcugcagaaaacauGCGAGa -3'
miRNA:   3'- uCGCUCG------UUCGUU----CGUCCGGu------------CGCUC- -5'
13094 5' -57.6 NC_003401.1 + 23213 0.67 0.734418
Target:  5'- -uCGGGCAGGCGGGguGGUgAuuGCGAa -3'
miRNA:   3'- ucGCUCGUUCGUUCguCCGgU--CGCUc -5'
13094 5' -57.6 NC_003401.1 + 132766 0.67 0.724406
Target:  5'- cGGCGuGgGGGaGGGgAGGCCGGCGGa -3'
miRNA:   3'- -UCGCuCgUUCgUUCgUCCGGUCGCUc -5'
13094 5' -57.6 NC_003401.1 + 133500 0.67 0.724406
Target:  5'- uGCGuGCGAGgGcGUccgaGGGCCAGaCGAGg -3'
miRNA:   3'- uCGCuCGUUCgUuCG----UCCGGUC-GCUC- -5'
13094 5' -57.6 NC_003401.1 + 785 0.67 0.724406
Target:  5'- uGCGuGCGAGgGcGUccgaGGGCCAGaCGAGg -3'
miRNA:   3'- uCGCuCGUUCgUuCG----UCCGGUC-GCUC- -5'
13094 5' -57.6 NC_003401.1 + 23643 0.67 0.693918
Target:  5'- cGCGAGCGgccGGCAGGUGGcGCC-GCGc- -3'
miRNA:   3'- uCGCUCGU---UCGUUCGUC-CGGuCGCuc -5'
13094 5' -57.6 NC_003401.1 + 42437 0.68 0.683635
Target:  5'- cGUGGGCGucaucgGGCAGGUguuagcguAGGCCAGCa-- -3'
miRNA:   3'- uCGCUCGU------UCGUUCG--------UCCGGUCGcuc -5'
13094 5' -57.6 NC_003401.1 + 106119 0.68 0.673309
Target:  5'- uGGCGGGCcuGCAaauuucgagAGCAGGCCGuuuuacGUGAu -3'
miRNA:   3'- -UCGCUCGuuCGU---------UCGUCCGGU------CGCUc -5'
13094 5' -57.6 NC_003401.1 + 106876 0.68 0.673309
Target:  5'- cGGCGuuuGCGGGUuuGGCGGGuUCGGUGAGc -3'
miRNA:   3'- -UCGCu--CGUUCGu-UCGUCC-GGUCGCUC- -5'
13094 5' -57.6 NC_003401.1 + 16867 0.69 0.590181
Target:  5'- uGGCGguguaccaaaAGCugGCGAGCAGGU--GCGAGg -3'
miRNA:   3'- -UCGC----------UCGuuCGUUCGUCCGguCGCUC- -5'
13094 5' -57.6 NC_003401.1 + 121633 0.7 0.549117
Target:  5'- cGGCGGuGCAGGUGAGUggGGGCCGGgGuGu -3'
miRNA:   3'- -UCGCU-CGUUCGUUCG--UCCGGUCgCuC- -5'
13094 5' -57.6 NC_003401.1 + 119023 0.72 0.442017
Target:  5'- cAGCGuGCAccgaGGCGAGgAGGgCGGCGAu -3'
miRNA:   3'- -UCGCuCGU----UCGUUCgUCCgGUCGCUc -5'
13094 5' -57.6 NC_003401.1 + 9441 0.72 0.442017
Target:  5'- cGUG-GCAGGCGGGCAacaauGGCCAGgGAa -3'
miRNA:   3'- uCGCuCGUUCGUUCGU-----CCGGUCgCUc -5'
13094 5' -57.6 NC_003401.1 + 14156 0.73 0.380323
Target:  5'- uGGCGGGC-GGCAAGUacAGGCguGUGGGu -3'
miRNA:   3'- -UCGCUCGuUCGUUCG--UCCGguCGCUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.