miRNA display CGI


Results 1 - 20 of 49 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13095 5' -57.7 NC_003401.1 + 238 0.67 0.730574
Target:  5'- cCCCUcaGCaAGCAGgCCagcgagcaggcaGGCAGCCgUACc -3'
miRNA:   3'- -GGGA--UGaUCGUCgGG------------UCGUCGGgAUG- -5'
13095 5' -57.7 NC_003401.1 + 278 0.67 0.699396
Target:  5'- cCCCUcaGCaAGCAGgCCAGCgAGCaagcaggCCUACu -3'
miRNA:   3'- -GGGA--UGaUCGUCgGGUCG-UCG-------GGAUG- -5'
13095 5' -57.7 NC_003401.1 + 342 0.67 0.699396
Target:  5'- cCCCUcaGCaAGCAGgCCAGCgAGCaagcaggCCUACu -3'
miRNA:   3'- -GGGA--UGaUCGUCgGGUCG-UCG-------GGAUG- -5'
13095 5' -57.7 NC_003401.1 + 372 0.92 0.02259
Target:  5'- gCCCUACUAGCAagCCAGCAGCCCUACu -3'
miRNA:   3'- -GGGAUGAUCGUcgGGUCGUCGGGAUG- -5'
13095 5' -57.7 NC_003401.1 + 586 0.72 0.413276
Target:  5'- cCCCU--UAGCaAGCa-AGCAGCCCUACu -3'
miRNA:   3'- -GGGAugAUCG-UCGggUCGUCGGGAUG- -5'
13095 5' -57.7 NC_003401.1 + 635 0.9 0.029816
Target:  5'- ----nCUAGCAGCCCAGCAGCCCUACu -3'
miRNA:   3'- gggauGAUCGUCGGGUCGUCGGGAUG- -5'
13095 5' -57.7 NC_003401.1 + 660 1.11 0.001095
Target:  5'- gCCCUACUAGCAGCCCAGCAGCCCUACu -3'
miRNA:   3'- -GGGAUGAUCGUCGGGUCGUCGGGAUG- -5'
13095 5' -57.7 NC_003401.1 + 700 1.11 0.001095
Target:  5'- gCCCUACUAGCAGCCCAGCAGCCCUACu -3'
miRNA:   3'- -GGGAUGAUCGUCGGGUCGUCGGGAUG- -5'
13095 5' -57.7 NC_003401.1 + 740 1.11 0.001095
Target:  5'- gCCCUACUAGCAGCCCAGCAGCCCUACu -3'
miRNA:   3'- -GGGAUGAUCGUCGGGUCGUCGGGAUG- -5'
13095 5' -57.7 NC_003401.1 + 780 1.11 0.001095
Target:  5'- gCCCUACUAGCAGCCCAGCAGCCCUACu -3'
miRNA:   3'- -GGGAUGAUCGUCGGGUCGUCGGGAUG- -5'
13095 5' -57.7 NC_003401.1 + 820 1.11 0.001095
Target:  5'- gCCCUACUAGCAGCCCAGCAGCCCUACu -3'
miRNA:   3'- -GGGAUGAUCGUCGGGUCGUCGGGAUG- -5'
13095 5' -57.7 NC_003401.1 + 876 0.75 0.302084
Target:  5'- gCCCUAgUAGCAGgCaAGCGGCCCcACu -3'
miRNA:   3'- -GGGAUgAUCGUCgGgUCGUCGGGaUG- -5'
13095 5' -57.7 NC_003401.1 + 930 0.79 0.180649
Target:  5'- gCCCUcGCacGCAGCuggCCGGCAGCCCUACu -3'
miRNA:   3'- -GGGA-UGauCGUCG---GGUCGUCGGGAUG- -5'
13095 5' -57.7 NC_003401.1 + 1069 0.74 0.346733
Target:  5'- cCCCUuuuuccgUUAGCAacaaaCCAGCAGCCCUACu -3'
miRNA:   3'- -GGGAu------GAUCGUcg---GGUCGUCGGGAUG- -5'
13095 5' -57.7 NC_003401.1 + 14891 0.7 0.536321
Target:  5'- cCCCgcCUGGCGGCCagagaugccaGGaCGGCCCUGg -3'
miRNA:   3'- -GGGauGAUCGUCGGg---------UC-GUCGGGAUg -5'
13095 5' -57.7 NC_003401.1 + 17691 0.67 0.730574
Target:  5'- aCCUGCgcgaccgaaAGCcuGCCCGGUGGacCCCUGCg -3'
miRNA:   3'- gGGAUGa--------UCGu-CGGGUCGUC--GGGAUG- -5'
13095 5' -57.7 NC_003401.1 + 18290 0.73 0.404536
Target:  5'- aCCCUugUGGCcGCCgCcGC-GCCCUGCc -3'
miRNA:   3'- -GGGAugAUCGuCGG-GuCGuCGGGAUG- -5'
13095 5' -57.7 NC_003401.1 + 21311 0.68 0.638748
Target:  5'- gCCCUcGC-GGCGGUCCccgaAGCCCUGCg -3'
miRNA:   3'- -GGGA-UGaUCGUCGGGucg-UCGGGAUG- -5'
13095 5' -57.7 NC_003401.1 + 41467 0.68 0.659416
Target:  5'- aCCUGCUcaGGCAGUCCucGCGGCaCCc-- -3'
miRNA:   3'- gGGAUGA--UCGUCGGGu-CGUCG-GGaug -5'
13095 5' -57.7 NC_003401.1 + 58237 0.67 0.710537
Target:  5'- uUCUACUAGaCAGUCCAGCcacgAGUCCc-- -3'
miRNA:   3'- gGGAUGAUC-GUCGGGUCG----UCGGGaug -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.