miRNA display CGI


Results 1 - 20 of 49 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13095 5' -57.7 NC_003401.1 + 133717 0.69 0.587125
Target:  5'- aUCUggGCcGGguGCCCGGCGGUCCggGCg -3'
miRNA:   3'- -GGGa-UGaUCguCGGGUCGUCGGGa-UG- -5'
13095 5' -57.7 NC_003401.1 + 133645 0.79 0.180649
Target:  5'- gCCCUcGCacGCAGCuggCCGGCAGCCCUACu -3'
miRNA:   3'- -GGGA-UGauCGUCG---GGUCGUCGGGAUG- -5'
13095 5' -57.7 NC_003401.1 + 133591 0.75 0.302084
Target:  5'- gCCCUAgUAGCAGgCaAGCGGCCCcACu -3'
miRNA:   3'- -GGGAUgAUCGUCgGgUCGUCGGGaUG- -5'
13095 5' -57.7 NC_003401.1 + 133535 1.11 0.001095
Target:  5'- gCCCUACUAGCAGCCCAGCAGCCCUACu -3'
miRNA:   3'- -GGGAUGAUCGUCGGGUCGUCGGGAUG- -5'
13095 5' -57.7 NC_003401.1 + 133495 1.11 0.001095
Target:  5'- gCCCUACUAGCAGCCCAGCAGCCCUACu -3'
miRNA:   3'- -GGGAUGAUCGUCGGGUCGUCGGGAUG- -5'
13095 5' -57.7 NC_003401.1 + 133455 1.11 0.001095
Target:  5'- gCCCUACUAGCAGCCCAGCAGCCCUACu -3'
miRNA:   3'- -GGGAUGAUCGUCGGGUCGUCGGGAUG- -5'
13095 5' -57.7 NC_003401.1 + 133415 1.11 0.001095
Target:  5'- gCCCUACUAGCAGCCCAGCAGCCCUACu -3'
miRNA:   3'- -GGGAUGAUCGUCGGGUCGUCGGGAUG- -5'
13095 5' -57.7 NC_003401.1 + 133375 1.11 0.001095
Target:  5'- gCCCUACUAGCAGCCCAGCAGCCCUACu -3'
miRNA:   3'- -GGGAUGAUCGUCGGGUCGUCGGGAUG- -5'
13095 5' -57.7 NC_003401.1 + 133350 0.9 0.029816
Target:  5'- ----nCUAGCAGCCCAGCAGCCCUACu -3'
miRNA:   3'- gggauGAUCGUCGGGUCGUCGGGAUG- -5'
13095 5' -57.7 NC_003401.1 + 133301 0.72 0.413276
Target:  5'- cCCCU--UAGCaAGCa-AGCAGCCCUACu -3'
miRNA:   3'- -GGGAugAUCG-UCGggUCGUCGGGAUG- -5'
13095 5' -57.7 NC_003401.1 + 133107 0.92 0.02259
Target:  5'- gCCCUACUAGCAagCCAGCAGCCCUACu -3'
miRNA:   3'- -GGGAUGAUCGUcgGGUCGUCGGGAUG- -5'
13095 5' -57.7 NC_003401.1 + 133077 0.67 0.699396
Target:  5'- cCCCUcaGCaAGCAGgCCAGCgAGCaagcaggCCUACu -3'
miRNA:   3'- -GGGA--UGaUCGUCgGGUCG-UCG-------GGAUG- -5'
13095 5' -57.7 NC_003401.1 + 133013 0.67 0.699396
Target:  5'- cCCCUcaGCaAGCAGgCCAGCgAGCaagcaggCCUACu -3'
miRNA:   3'- -GGGA--UGaUCGUCgGGUCG-UCG-------GGAUG- -5'
13095 5' -57.7 NC_003401.1 + 132973 0.67 0.730574
Target:  5'- cCCCUcaGCaAGCAGgCCagcgagcaggcaGGCAGCCgUACc -3'
miRNA:   3'- -GGGA--UGaUCGUCgGG------------UCGUCGGgAUG- -5'
13095 5' -57.7 NC_003401.1 + 132604 0.68 0.669721
Target:  5'- gCCCgGCggAGCGGCaCCcgggGGCGGCCCcgGCc -3'
miRNA:   3'- -GGGaUGa-UCGUCG-GG----UCGUCGGGa-UG- -5'
13095 5' -57.7 NC_003401.1 + 132492 0.67 0.740467
Target:  5'- cCCCgguCcGGCcgAGCCCGGCGGCgCCg-- -3'
miRNA:   3'- -GGGau-GaUCG--UCGGGUCGUCG-GGaug -5'
13095 5' -57.7 NC_003401.1 + 128787 0.67 0.730574
Target:  5'- -gCUGC-AGCGGCCCAGCgagGGUUCgUGCg -3'
miRNA:   3'- ggGAUGaUCGUCGGGUCG---UCGGG-AUG- -5'
13095 5' -57.7 NC_003401.1 + 125748 0.72 0.449369
Target:  5'- gCCaCUGCUGGCGGCCUcGaCGGCgUUGCa -3'
miRNA:   3'- -GG-GAUGAUCGUCGGGuC-GUCGgGAUG- -5'
13095 5' -57.7 NC_003401.1 + 121880 0.7 0.526332
Target:  5'- gCCCUugUucuGCAaccGCCCGcacuuGCGGCCCUGa -3'
miRNA:   3'- -GGGAugAu--CGU---CGGGU-----CGUCGGGAUg -5'
13095 5' -57.7 NC_003401.1 + 119989 0.66 0.757057
Target:  5'- uCCCUGgUGGCGGCCgccugcgcgcuguuUAGCcucgguGCCgCUGCg -3'
miRNA:   3'- -GGGAUgAUCGUCGG--------------GUCGu-----CGG-GAUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.