Results 21 - 40 of 49 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
13095 | 5' | -57.7 | NC_003401.1 | + | 586 | 0.72 | 0.413276 |
Target: 5'- cCCCU--UAGCaAGCa-AGCAGCCCUACu -3' miRNA: 3'- -GGGAugAUCG-UCGggUCGUCGGGAUG- -5' |
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13095 | 5' | -57.7 | NC_003401.1 | + | 133301 | 0.72 | 0.413276 |
Target: 5'- cCCCU--UAGCaAGCa-AGCAGCCCUACu -3' miRNA: 3'- -GGGAugAUCG-UCGggUCGUCGGGAUG- -5' |
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13095 | 5' | -57.7 | NC_003401.1 | + | 125748 | 0.72 | 0.449369 |
Target: 5'- gCCaCUGCUGGCGGCCUcGaCGGCgUUGCa -3' miRNA: 3'- -GG-GAUGAUCGUCGGGuC-GUCGgGAUG- -5' |
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13095 | 5' | -57.7 | NC_003401.1 | + | 89123 | 0.71 | 0.477547 |
Target: 5'- -gCUGCUGGguGCCgucccuGcCAGCCCUACg -3' miRNA: 3'- ggGAUGAUCguCGGgu----C-GUCGGGAUG- -5' |
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13095 | 5' | -57.7 | NC_003401.1 | + | 121880 | 0.7 | 0.526332 |
Target: 5'- gCCCUugUucuGCAaccGCCCGcacuuGCGGCCCUGa -3' miRNA: 3'- -GGGAugAu--CGU---CGGGU-----CGUCGGGAUg -5' |
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13095 | 5' | -57.7 | NC_003401.1 | + | 14891 | 0.7 | 0.536321 |
Target: 5'- cCCCgcCUGGCGGCCagagaugccaGGaCGGCCCUGg -3' miRNA: 3'- -GGGauGAUCGUCGGg---------UC-GUCGGGAUg -5' |
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13095 | 5' | -57.7 | NC_003401.1 | + | 133717 | 0.69 | 0.587125 |
Target: 5'- aUCUggGCcGGguGCCCGGCGGUCCggGCg -3' miRNA: 3'- -GGGa-UGaUCguCGGGUCGUCGGGa-UG- -5' |
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13095 | 5' | -57.7 | NC_003401.1 | + | 79576 | 0.69 | 0.607727 |
Target: 5'- aCCaCaACUgaAGCGGCCCGGgAGCCaUGCa -3' miRNA: 3'- -GG-GaUGA--UCGUCGGGUCgUCGGgAUG- -5' |
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13095 | 5' | -57.7 | NC_003401.1 | + | 21311 | 0.68 | 0.638748 |
Target: 5'- gCCCUcGC-GGCGGUCCccgaAGCCCUGCg -3' miRNA: 3'- -GGGA-UGaUCGUCGGGucg-UCGGGAUG- -5' |
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13095 | 5' | -57.7 | NC_003401.1 | + | 41467 | 0.68 | 0.659416 |
Target: 5'- aCCUGCUcaGGCAGUCCucGCGGCaCCc-- -3' miRNA: 3'- gGGAUGA--UCGUCGGGu-CGUCG-GGaug -5' |
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13095 | 5' | -57.7 | NC_003401.1 | + | 93092 | 0.68 | 0.669721 |
Target: 5'- ---aGCUGGCGGCCCugguguguAGCAGCUCg-- -3' miRNA: 3'- gggaUGAUCGUCGGG--------UCGUCGGGaug -5' |
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13095 | 5' | -57.7 | NC_003401.1 | + | 132604 | 0.68 | 0.669721 |
Target: 5'- gCCCgGCggAGCGGCaCCcgggGGCGGCCCcgGCc -3' miRNA: 3'- -GGGaUGa-UCGUCG-GG----UCGUCGGGa-UG- -5' |
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13095 | 5' | -57.7 | NC_003401.1 | + | 91230 | 0.68 | 0.690228 |
Target: 5'- aCCUGCcgcgagAGcCAGgCCGGUAGCCCa-- -3' miRNA: 3'- gGGAUGa-----UC-GUCgGGUCGUCGGGaug -5' |
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13095 | 5' | -57.7 | NC_003401.1 | + | 278 | 0.67 | 0.699396 |
Target: 5'- cCCCUcaGCaAGCAGgCCAGCgAGCaagcaggCCUACu -3' miRNA: 3'- -GGGA--UGaUCGUCgGGUCG-UCG-------GGAUG- -5' |
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13095 | 5' | -57.7 | NC_003401.1 | + | 133013 | 0.67 | 0.699396 |
Target: 5'- cCCCUcaGCaAGCAGgCCAGCgAGCaagcaggCCUACu -3' miRNA: 3'- -GGGA--UGaUCGUCgGGUCG-UCG-------GGAUG- -5' |
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13095 | 5' | -57.7 | NC_003401.1 | + | 342 | 0.67 | 0.699396 |
Target: 5'- cCCCUcaGCaAGCAGgCCAGCgAGCaagcaggCCUACu -3' miRNA: 3'- -GGGA--UGaUCGUCgGGUCG-UCG-------GGAUG- -5' |
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13095 | 5' | -57.7 | NC_003401.1 | + | 133077 | 0.67 | 0.699396 |
Target: 5'- cCCCUcaGCaAGCAGgCCAGCgAGCaagcaggCCUACu -3' miRNA: 3'- -GGGA--UGaUCGUCgGGUCG-UCG-------GGAUG- -5' |
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13095 | 5' | -57.7 | NC_003401.1 | + | 58237 | 0.67 | 0.710537 |
Target: 5'- uUCUACUAGaCAGUCCAGCcacgAGUCCc-- -3' miRNA: 3'- gGGAUGAUC-GUCGGGUCG----UCGGGaug -5' |
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13095 | 5' | -57.7 | NC_003401.1 | + | 86878 | 0.67 | 0.720594 |
Target: 5'- uCCCUGCgAGUuuGCCagGGCagauuugcaGGCCCUGCa -3' miRNA: 3'- -GGGAUGaUCGu-CGGg-UCG---------UCGGGAUG- -5' |
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13095 | 5' | -57.7 | NC_003401.1 | + | 128787 | 0.67 | 0.730574 |
Target: 5'- -gCUGC-AGCGGCCCAGCgagGGUUCgUGCg -3' miRNA: 3'- ggGAUGaUCGUCGGGUCG---UCGGG-AUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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