Results 21 - 40 of 49 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
13095 | 5' | -57.7 | NC_003401.1 | + | 21311 | 0.68 | 0.638748 |
Target: 5'- gCCCUcGC-GGCGGUCCccgaAGCCCUGCg -3' miRNA: 3'- -GGGA-UGaUCGUCGGGucg-UCGGGAUG- -5' |
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13095 | 5' | -57.7 | NC_003401.1 | + | 79576 | 0.69 | 0.607727 |
Target: 5'- aCCaCaACUgaAGCGGCCCGGgAGCCaUGCa -3' miRNA: 3'- -GG-GaUGA--UCGUCGGGUCgUCGGgAUG- -5' |
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13095 | 5' | -57.7 | NC_003401.1 | + | 133717 | 0.69 | 0.587125 |
Target: 5'- aUCUggGCcGGguGCCCGGCGGUCCggGCg -3' miRNA: 3'- -GGGa-UGaUCguCGGGUCGUCGGGa-UG- -5' |
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13095 | 5' | -57.7 | NC_003401.1 | + | 14891 | 0.7 | 0.536321 |
Target: 5'- cCCCgcCUGGCGGCCagagaugccaGGaCGGCCCUGg -3' miRNA: 3'- -GGGauGAUCGUCGGg---------UC-GUCGGGAUg -5' |
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13095 | 5' | -57.7 | NC_003401.1 | + | 121880 | 0.7 | 0.526332 |
Target: 5'- gCCCUugUucuGCAaccGCCCGcacuuGCGGCCCUGa -3' miRNA: 3'- -GGGAugAu--CGU---CGGGU-----CGUCGGGAUg -5' |
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13095 | 5' | -57.7 | NC_003401.1 | + | 89123 | 0.71 | 0.477547 |
Target: 5'- -gCUGCUGGguGCCgucccuGcCAGCCCUACg -3' miRNA: 3'- ggGAUGAUCguCGGgu----C-GUCGGGAUG- -5' |
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13095 | 5' | -57.7 | NC_003401.1 | + | 125748 | 0.72 | 0.449369 |
Target: 5'- gCCaCUGCUGGCGGCCUcGaCGGCgUUGCa -3' miRNA: 3'- -GG-GAUGAUCGUCGGGuC-GUCGgGAUG- -5' |
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13095 | 5' | -57.7 | NC_003401.1 | + | 586 | 0.72 | 0.413276 |
Target: 5'- cCCCU--UAGCaAGCa-AGCAGCCCUACu -3' miRNA: 3'- -GGGAugAUCG-UCGggUCGUCGGGAUG- -5' |
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13095 | 5' | -57.7 | NC_003401.1 | + | 133301 | 0.72 | 0.413276 |
Target: 5'- cCCCU--UAGCaAGCa-AGCAGCCCUACu -3' miRNA: 3'- -GGGAugAUCG-UCGggUCGUCGGGAUG- -5' |
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13095 | 5' | -57.7 | NC_003401.1 | + | 18290 | 0.73 | 0.404536 |
Target: 5'- aCCCUugUGGCcGCCgCcGC-GCCCUGCc -3' miRNA: 3'- -GGGAugAUCGuCGG-GuCGuCGGGAUG- -5' |
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13095 | 5' | -57.7 | NC_003401.1 | + | 1069 | 0.74 | 0.346733 |
Target: 5'- cCCCUuuuuccgUUAGCAacaaaCCAGCAGCCCUACu -3' miRNA: 3'- -GGGAu------GAUCGUcg---GGUCGUCGGGAUG- -5' |
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13095 | 5' | -57.7 | NC_003401.1 | + | 876 | 0.75 | 0.302084 |
Target: 5'- gCCCUAgUAGCAGgCaAGCGGCCCcACu -3' miRNA: 3'- -GGGAUgAUCGUCgGgUCGUCGGGaUG- -5' |
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13095 | 5' | -57.7 | NC_003401.1 | + | 133591 | 0.75 | 0.302084 |
Target: 5'- gCCCUAgUAGCAGgCaAGCGGCCCcACu -3' miRNA: 3'- -GGGAUgAUCGUCgGgUCGUCGGGaUG- -5' |
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13095 | 5' | -57.7 | NC_003401.1 | + | 930 | 0.79 | 0.180649 |
Target: 5'- gCCCUcGCacGCAGCuggCCGGCAGCCCUACu -3' miRNA: 3'- -GGGA-UGauCGUCG---GGUCGUCGGGAUG- -5' |
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13095 | 5' | -57.7 | NC_003401.1 | + | 133645 | 0.79 | 0.180649 |
Target: 5'- gCCCUcGCacGCAGCuggCCGGCAGCCCUACu -3' miRNA: 3'- -GGGA-UGauCGUCG---GGUCGUCGGGAUG- -5' |
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13095 | 5' | -57.7 | NC_003401.1 | + | 635 | 0.9 | 0.029816 |
Target: 5'- ----nCUAGCAGCCCAGCAGCCCUACu -3' miRNA: 3'- gggauGAUCGUCGGGUCGUCGGGAUG- -5' |
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13095 | 5' | -57.7 | NC_003401.1 | + | 133350 | 0.9 | 0.029816 |
Target: 5'- ----nCUAGCAGCCCAGCAGCCCUACu -3' miRNA: 3'- gggauGAUCGUCGGGUCGUCGGGAUG- -5' |
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13095 | 5' | -57.7 | NC_003401.1 | + | 372 | 0.92 | 0.02259 |
Target: 5'- gCCCUACUAGCAagCCAGCAGCCCUACu -3' miRNA: 3'- -GGGAUGAUCGUcgGGUCGUCGGGAUG- -5' |
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13095 | 5' | -57.7 | NC_003401.1 | + | 133107 | 0.92 | 0.02259 |
Target: 5'- gCCCUACUAGCAagCCAGCAGCCCUACu -3' miRNA: 3'- -GGGAUGAUCGUcgGGUCGUCGGGAUG- -5' |
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13095 | 5' | -57.7 | NC_003401.1 | + | 660 | 1.11 | 0.001095 |
Target: 5'- gCCCUACUAGCAGCCCAGCAGCCCUACu -3' miRNA: 3'- -GGGAUGAUCGUCGGGUCGUCGGGAUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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