miRNA display CGI


Results 1 - 20 of 50 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13096 3' -58.5 NC_003401.1 + 85852 0.66 0.716291
Target:  5'- --cCCAGCAGGC-GCCCc-CUGGCu- -3'
miRNA:   3'- uucGGUCGUCCGuCGGGauGAUCGuc -5'
13096 3' -58.5 NC_003401.1 + 89153 0.66 0.710164
Target:  5'- -cGCUAGUAGGCGGCgCuagagaugaaaauagCUGCUGGguGc -3'
miRNA:   3'- uuCGGUCGUCCGUCG-G---------------GAUGAUCguC- -5'
13096 3' -58.5 NC_003401.1 + 127866 0.66 0.695773
Target:  5'- aAAGCCAccgagGaCAGGCGuGCCggugcgcgccagCUGCUGGCAGu -3'
miRNA:   3'- -UUCGGU-----C-GUCCGU-CGG------------GAUGAUCGUC- -5'
13096 3' -58.5 NC_003401.1 + 133371 0.66 0.695773
Target:  5'- -uGCUAGUAgGGCuGCUgggCUGCUAGUAGg -3'
miRNA:   3'- uuCGGUCGU-CCGuCGG---GAUGAUCGUC- -5'
13096 3' -58.5 NC_003401.1 + 133331 0.66 0.695773
Target:  5'- -uGCUAGUAgGGCuGCUgggCUGCUAGUAGg -3'
miRNA:   3'- uuCGGUCGU-CCGuCGG---GAUGAUCGUC- -5'
13096 3' -58.5 NC_003401.1 + 133291 0.66 0.695773
Target:  5'- -uGCUAGUAgGGCuGCUgggCUGCUAGUAGg -3'
miRNA:   3'- uuCGGUCGU-CCGuCGG---GAUGAUCGUC- -5'
13096 3' -58.5 NC_003401.1 + 133251 0.66 0.695773
Target:  5'- -uGCUAGUAgGGCuGCUgggCUGCUAGUAGg -3'
miRNA:   3'- uuCGGUCGU-CCGuCGG---GAUGAUCGUC- -5'
13096 3' -58.5 NC_003401.1 + 133211 0.66 0.695773
Target:  5'- -uGCUAGUAgGGCuGCUgggCUGCUAGUAGg -3'
miRNA:   3'- uuCGGUCGU-CCGuCGG---GAUGAUCGUC- -5'
13096 3' -58.5 NC_003401.1 + 656 0.66 0.695773
Target:  5'- -uGCUAGUAgGGCuGCUgggCUGCUAGUAGg -3'
miRNA:   3'- uuCGGUCGU-CCGuCGG---GAUGAUCGUC- -5'
13096 3' -58.5 NC_003401.1 + 616 0.66 0.695773
Target:  5'- -uGCUAGUAgGGCuGCUgggCUGCUAGUAGg -3'
miRNA:   3'- uuCGGUCGU-CCGuCGG---GAUGAUCGUC- -5'
13096 3' -58.5 NC_003401.1 + 576 0.66 0.695773
Target:  5'- -uGCUAGUAgGGCuGCUgggCUGCUAGUAGg -3'
miRNA:   3'- uuCGGUCGU-CCGuCGG---GAUGAUCGUC- -5'
13096 3' -58.5 NC_003401.1 + 536 0.66 0.695773
Target:  5'- -uGCUAGUAgGGCuGCUgggCUGCUAGUAGg -3'
miRNA:   3'- uuCGGUCGU-CCGuCGG---GAUGAUCGUC- -5'
13096 3' -58.5 NC_003401.1 + 496 0.66 0.695773
Target:  5'- -uGCUAGUAgGGCuGCUgggCUGCUAGUAGg -3'
miRNA:   3'- uuCGGUCGU-CCGuCGG---GAUGAUCGUC- -5'
13096 3' -58.5 NC_003401.1 + 78223 0.67 0.6646
Target:  5'- -cGCCGGCAGGCAcaCCUGaaAGCAc -3'
miRNA:   3'- uuCGGUCGUCCGUcgGGAUgaUCGUc -5'
13096 3' -58.5 NC_003401.1 + 125068 0.67 0.643665
Target:  5'- gAGGCCAGguGGC-GCCCguccggugACgugaUGGCGGc -3'
miRNA:   3'- -UUCGGUCguCCGuCGGGa-------UG----AUCGUC- -5'
13096 3' -58.5 NC_003401.1 + 103908 0.67 0.633179
Target:  5'- gAGGCCAGCAucucGGCGGCCgaAC-GGCu- -3'
miRNA:   3'- -UUCGGUCGU----CCGUCGGgaUGaUCGuc -5'
13096 3' -58.5 NC_003401.1 + 23754 0.68 0.570528
Target:  5'- -uGCCAGguGGCAGCCgUcCaGGCGc -3'
miRNA:   3'- uuCGGUCguCCGUCGGgAuGaUCGUc -5'
13096 3' -58.5 NC_003401.1 + 86007 0.68 0.560203
Target:  5'- cAAGCCAGgGGGCG--CCUGCUGGgAGc -3'
miRNA:   3'- -UUCGGUCgUCCGUcgGGAUGAUCgUC- -5'
13096 3' -58.5 NC_003401.1 + 132456 0.68 0.549931
Target:  5'- gAGGCCGGC-GGC-GCCCgGCgcGCGGg -3'
miRNA:   3'- -UUCGGUCGuCCGuCGGGaUGauCGUC- -5'
13096 3' -58.5 NC_003401.1 + 66683 0.68 0.549931
Target:  5'- uGGCCuGCAGGCuugcugacaGGCCCguagcugcCUGGCGGc -3'
miRNA:   3'- uUCGGuCGUCCG---------UCGGGau------GAUCGUC- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.