miRNA display CGI


Results 1 - 20 of 50 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13096 3' -58.5 NC_003401.1 + 218 0.7 0.442025
Target:  5'- cGAGCaGGCAGGCAGCCgUACccGguGu -3'
miRNA:   3'- -UUCGgUCGUCCGUCGGgAUGauCguC- -5'
13096 3' -58.5 NC_003401.1 + 266 0.7 0.479996
Target:  5'- cAGGCCAGCGagcaaGCAGgCCUACUguccccucagcaAGCAGg -3'
miRNA:   3'- -UUCGGUCGUc----CGUCgGGAUGA------------UCGUC- -5'
13096 3' -58.5 NC_003401.1 + 330 0.7 0.479996
Target:  5'- cAGGCCAGCGagcaaGCAGgCCUACUguccccucagcaAGCAGg -3'
miRNA:   3'- -UUCGGUCGUc----CGUCgGGAUGA------------UCGUC- -5'
13096 3' -58.5 NC_003401.1 + 386 0.9 0.023005
Target:  5'- cAGGCCAGCGaGCAGCCCUACUAGCAa -3'
miRNA:   3'- -UUCGGUCGUcCGUCGGGAUGAUCGUc -5'
13096 3' -58.5 NC_003401.1 + 496 0.66 0.695773
Target:  5'- -uGCUAGUAgGGCuGCUgggCUGCUAGUAGg -3'
miRNA:   3'- uuCGGUCGU-CCGuCGG---GAUGAUCGUC- -5'
13096 3' -58.5 NC_003401.1 + 536 0.66 0.695773
Target:  5'- -uGCUAGUAgGGCuGCUgggCUGCUAGUAGg -3'
miRNA:   3'- uuCGGUCGU-CCGuCGG---GAUGAUCGUC- -5'
13096 3' -58.5 NC_003401.1 + 576 0.66 0.695773
Target:  5'- -uGCUAGUAgGGCuGCUgggCUGCUAGUAGg -3'
miRNA:   3'- uuCGGUCGU-CCGuCGG---GAUGAUCGUC- -5'
13096 3' -58.5 NC_003401.1 + 581 0.72 0.355133
Target:  5'- uAGCaAGCAaGCAGCCCUACUguccccucagcaAGCAGg -3'
miRNA:   3'- uUCGgUCGUcCGUCGGGAUGA------------UCGUC- -5'
13096 3' -58.5 NC_003401.1 + 616 0.66 0.695773
Target:  5'- -uGCUAGUAgGGCuGCUgggCUGCUAGUAGg -3'
miRNA:   3'- uuCGGUCGU-CCGuCGG---GAUGAUCGUC- -5'
13096 3' -58.5 NC_003401.1 + 656 0.66 0.695773
Target:  5'- -uGCUAGUAgGGCuGCUgggCUGCUAGUAGg -3'
miRNA:   3'- uuCGGUCGU-CCGuCGG---GAUGAUCGUC- -5'
13096 3' -58.5 NC_003401.1 + 662 0.82 0.085044
Target:  5'- cAGCCcuacuAGCAGcccaGCAGCCCUACUAGCAGc -3'
miRNA:   3'- uUCGG-----UCGUC----CGUCGGGAUGAUCGUC- -5'
13096 3' -58.5 NC_003401.1 + 703 0.84 0.059509
Target:  5'- gGAGCCcuacuAGCAGcccaGCAGCCCUACUAGCAGc -3'
miRNA:   3'- -UUCGG-----UCGUC----CGUCGGGAUGAUCGUC- -5'
13096 3' -58.5 NC_003401.1 + 743 0.84 0.059509
Target:  5'- gGAGCCcuacuAGCAGcccaGCAGCCCUACUAGCAGc -3'
miRNA:   3'- -UUCGG-----UCGUC----CGUCGGGAUGAUCGUC- -5'
13096 3' -58.5 NC_003401.1 + 769 0.72 0.371522
Target:  5'- -nGCC--CA-GCAGCCCUACUAGCAGc -3'
miRNA:   3'- uuCGGucGUcCGUCGGGAUGAUCGUC- -5'
13096 3' -58.5 NC_003401.1 + 802 0.82 0.085044
Target:  5'- cAGCCcuacuAGCAGcccaGCAGCCCUACUAGCAGc -3'
miRNA:   3'- uUCGG-----UCGUC----CGUCGGGAUGAUCGUC- -5'
13096 3' -58.5 NC_003401.1 + 834 1.05 0.001737
Target:  5'- cAAGCCAGCAGGCAGCCCUACUAGCAGc -3'
miRNA:   3'- -UUCGGUCGUCCGUCGGGAUGAUCGUC- -5'
13096 3' -58.5 NC_003401.1 + 878 0.73 0.301864
Target:  5'- cAGCCcuaguAGCAGGCaagcGGCCCcACUAGCAa -3'
miRNA:   3'- uUCGG-----UCGUCCG----UCGGGaUGAUCGUc -5'
13096 3' -58.5 NC_003401.1 + 919 0.73 0.301864
Target:  5'- cAGCUGGCcGGCAGCCCUACUcuguucucccAGCu- -3'
miRNA:   3'- uUCGGUCGuCCGUCGGGAUGA----------UCGuc -5'
13096 3' -58.5 NC_003401.1 + 16866 0.71 0.377378
Target:  5'- aAAGCCAGCcGGCAGCCCcucCUcguauaccgcgugcGGCGGc -3'
miRNA:   3'- -UUCGGUCGuCCGUCGGGau-GA--------------UCGUC- -5'
13096 3' -58.5 NC_003401.1 + 23239 0.7 0.479996
Target:  5'- uAGGCCAGgGGGUuguuGCCCUGuuuucgGGCAGg -3'
miRNA:   3'- -UUCGGUCgUCCGu---CGGGAUga----UCGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.