Results 21 - 40 of 50 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
13096 | 3' | -58.5 | NC_003401.1 | + | 23754 | 0.68 | 0.570528 |
Target: 5'- -uGCCAGguGGCAGCCgUcCaGGCGc -3' miRNA: 3'- uuCGGUCguCCGUCGGgAuGaUCGUc -5' |
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13096 | 3' | -58.5 | NC_003401.1 | + | 66683 | 0.68 | 0.549931 |
Target: 5'- uGGCCuGCAGGCuugcugacaGGCCCguagcugcCUGGCGGc -3' miRNA: 3'- uUCGGuCGUCCG---------UCGGGau------GAUCGUC- -5' |
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13096 | 3' | -58.5 | NC_003401.1 | + | 78223 | 0.67 | 0.6646 |
Target: 5'- -cGCCGGCAGGCAcaCCUGaaAGCAc -3' miRNA: 3'- uuCGGUCGUCCGUcgGGAUgaUCGUc -5' |
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13096 | 3' | -58.5 | NC_003401.1 | + | 85852 | 0.66 | 0.716291 |
Target: 5'- --cCCAGCAGGC-GCCCc-CUGGCu- -3' miRNA: 3'- uucGGUCGUCCGuCGGGauGAUCGuc -5' |
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13096 | 3' | -58.5 | NC_003401.1 | + | 86007 | 0.68 | 0.560203 |
Target: 5'- cAAGCCAGgGGGCG--CCUGCUGGgAGc -3' miRNA: 3'- -UUCGGUCgUCCGUcgGGAUGAUCgUC- -5' |
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13096 | 3' | -58.5 | NC_003401.1 | + | 89153 | 0.66 | 0.710164 |
Target: 5'- -cGCUAGUAGGCGGCgCuagagaugaaaauagCUGCUGGguGc -3' miRNA: 3'- uuCGGUCGUCCGUCG-G---------------GAUGAUCguC- -5' |
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13096 | 3' | -58.5 | NC_003401.1 | + | 93087 | 0.69 | 0.49957 |
Target: 5'- cAGCaAGCuGGCGGCCCUGgUguguAGCAGc -3' miRNA: 3'- uUCGgUCGuCCGUCGGGAUgA----UCGUC- -5' |
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13096 | 3' | -58.5 | NC_003401.1 | + | 103908 | 0.67 | 0.633179 |
Target: 5'- gAGGCCAGCAucucGGCGGCCgaAC-GGCu- -3' miRNA: 3'- -UUCGGUCGU----CCGUCGGgaUGaUCGuc -5' |
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13096 | 3' | -58.5 | NC_003401.1 | + | 116521 | 0.69 | 0.518488 |
Target: 5'- gGAGCCuuGGCAGGCAGUcgcaCCUcugugcgGCUAGCu- -3' miRNA: 3'- -UUCGG--UCGUCCGUCG----GGA-------UGAUCGuc -5' |
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13096 | 3' | -58.5 | NC_003401.1 | + | 125068 | 0.67 | 0.643665 |
Target: 5'- gAGGCCAGguGGC-GCCCguccggugACgugaUGGCGGc -3' miRNA: 3'- -UUCGGUCguCCGuCGGGa-------UG----AUCGUC- -5' |
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13096 | 3' | -58.5 | NC_003401.1 | + | 127866 | 0.66 | 0.695773 |
Target: 5'- aAAGCCAccgagGaCAGGCGuGCCggugcgcgccagCUGCUGGCAGu -3' miRNA: 3'- -UUCGGU-----C-GUCCGU-CGG------------GAUGAUCGUC- -5' |
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13096 | 3' | -58.5 | NC_003401.1 | + | 132456 | 0.68 | 0.549931 |
Target: 5'- gAGGCCGGC-GGC-GCCCgGCgcGCGGg -3' miRNA: 3'- -UUCGGUCGuCCGuCGGGaUGauCGUC- -5' |
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13096 | 3' | -58.5 | NC_003401.1 | + | 132953 | 0.7 | 0.442025 |
Target: 5'- cGAGCaGGCAGGCAGCCgUACccGguGu -3' miRNA: 3'- -UUCGgUCGUCCGUCGGgAUGauCguC- -5' |
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13096 | 3' | -58.5 | NC_003401.1 | + | 133001 | 0.7 | 0.479996 |
Target: 5'- cAGGCCAGCGagcaaGCAGgCCUACUguccccucagcaAGCAGg -3' miRNA: 3'- -UUCGGUCGUc----CGUCgGGAUGA------------UCGUC- -5' |
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13096 | 3' | -58.5 | NC_003401.1 | + | 133065 | 0.7 | 0.479996 |
Target: 5'- cAGGCCAGCGagcaaGCAGgCCUACUguccccucagcaAGCAGg -3' miRNA: 3'- -UUCGGUCGUc----CGUCgGGAUGA------------UCGUC- -5' |
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13096 | 3' | -58.5 | NC_003401.1 | + | 133121 | 0.9 | 0.023005 |
Target: 5'- cAGGCCAGCGaGCAGCCCUACUAGCAa -3' miRNA: 3'- -UUCGGUCGUcCGUCGGGAUGAUCGUc -5' |
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13096 | 3' | -58.5 | NC_003401.1 | + | 133211 | 0.66 | 0.695773 |
Target: 5'- -uGCUAGUAgGGCuGCUgggCUGCUAGUAGg -3' miRNA: 3'- uuCGGUCGU-CCGuCGG---GAUGAUCGUC- -5' |
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13096 | 3' | -58.5 | NC_003401.1 | + | 133251 | 0.66 | 0.695773 |
Target: 5'- -uGCUAGUAgGGCuGCUgggCUGCUAGUAGg -3' miRNA: 3'- uuCGGUCGU-CCGuCGG---GAUGAUCGUC- -5' |
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13096 | 3' | -58.5 | NC_003401.1 | + | 133291 | 0.66 | 0.695773 |
Target: 5'- -uGCUAGUAgGGCuGCUgggCUGCUAGUAGg -3' miRNA: 3'- uuCGGUCGU-CCGuCGG---GAUGAUCGUC- -5' |
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13096 | 3' | -58.5 | NC_003401.1 | + | 133296 | 0.72 | 0.355133 |
Target: 5'- uAGCaAGCAaGCAGCCCUACUguccccucagcaAGCAGg -3' miRNA: 3'- uUCGgUCGUcCGUCGGGAUGA------------UCGUC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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