Results 21 - 40 of 50 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
13096 | 3' | -58.5 | NC_003401.1 | + | 116521 | 0.69 | 0.518488 |
Target: 5'- gGAGCCuuGGCAGGCAGUcgcaCCUcugugcgGCUAGCu- -3' miRNA: 3'- -UUCGG--UCGUCCGUCG----GGA-------UGAUCGuc -5' |
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13096 | 3' | -58.5 | NC_003401.1 | + | 93087 | 0.69 | 0.49957 |
Target: 5'- cAGCaAGCuGGCGGCCCUGgUguguAGCAGc -3' miRNA: 3'- uUCGgUCGuCCGUCGGGAUgA----UCGUC- -5' |
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13096 | 3' | -58.5 | NC_003401.1 | + | 23239 | 0.7 | 0.479996 |
Target: 5'- uAGGCCAGgGGGUuguuGCCCUGuuuucgGGCAGg -3' miRNA: 3'- -UUCGGUCgUCCGu---CGGGAUga----UCGUC- -5' |
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13096 | 3' | -58.5 | NC_003401.1 | + | 218 | 0.7 | 0.442025 |
Target: 5'- cGAGCaGGCAGGCAGCCgUACccGguGu -3' miRNA: 3'- -UUCGgUCGUCCGUCGGgAUGauCguC- -5' |
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13096 | 3' | -58.5 | NC_003401.1 | + | 132953 | 0.7 | 0.442025 |
Target: 5'- cGAGCaGGCAGGCAGCCgUACccGguGu -3' miRNA: 3'- -UUCGgUCGUCCGUCGGgAUGauCguC- -5' |
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13096 | 3' | -58.5 | NC_003401.1 | + | 133065 | 0.7 | 0.479996 |
Target: 5'- cAGGCCAGCGagcaaGCAGgCCUACUguccccucagcaAGCAGg -3' miRNA: 3'- -UUCGGUCGUc----CGUCgGGAUGA------------UCGUC- -5' |
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13096 | 3' | -58.5 | NC_003401.1 | + | 266 | 0.7 | 0.479996 |
Target: 5'- cAGGCCAGCGagcaaGCAGgCCUACUguccccucagcaAGCAGg -3' miRNA: 3'- -UUCGGUCGUc----CGUCgGGAUGA------------UCGUC- -5' |
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13096 | 3' | -58.5 | NC_003401.1 | + | 330 | 0.7 | 0.479996 |
Target: 5'- cAGGCCAGCGagcaaGCAGgCCUACUguccccucagcaAGCAGg -3' miRNA: 3'- -UUCGGUCGUc----CGUCgGGAUGA------------UCGUC- -5' |
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13096 | 3' | -58.5 | NC_003401.1 | + | 133001 | 0.7 | 0.479996 |
Target: 5'- cAGGCCAGCGagcaaGCAGgCCUACUguccccucagcaAGCAGg -3' miRNA: 3'- -UUCGGUCGUc----CGUCgGGAUGA------------UCGUC- -5' |
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13096 | 3' | -58.5 | NC_003401.1 | + | 16866 | 0.71 | 0.377378 |
Target: 5'- aAAGCCAGCcGGCAGCCCcucCUcguauaccgcgugcGGCGGc -3' miRNA: 3'- -UUCGGUCGuCCGUCGGGau-GA--------------UCGUC- -5' |
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13096 | 3' | -58.5 | NC_003401.1 | + | 581 | 0.72 | 0.355133 |
Target: 5'- uAGCaAGCAaGCAGCCCUACUguccccucagcaAGCAGg -3' miRNA: 3'- uUCGgUCGUcCGUCGGGAUGA------------UCGUC- -5' |
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13096 | 3' | -58.5 | NC_003401.1 | + | 769 | 0.72 | 0.371522 |
Target: 5'- -nGCC--CA-GCAGCCCUACUAGCAGc -3' miRNA: 3'- uuCGGucGUcCGUCGGGAUGAUCGUC- -5' |
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13096 | 3' | -58.5 | NC_003401.1 | + | 133296 | 0.72 | 0.355133 |
Target: 5'- uAGCaAGCAaGCAGCCCUACUguccccucagcaAGCAGg -3' miRNA: 3'- uUCGgUCGUcCGUCGGGAUGA------------UCGUC- -5' |
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13096 | 3' | -58.5 | NC_003401.1 | + | 133484 | 0.72 | 0.371522 |
Target: 5'- -nGCC--CA-GCAGCCCUACUAGCAGc -3' miRNA: 3'- uuCGGucGUcCGUCGGGAUGAUCGUC- -5' |
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13096 | 3' | -58.5 | NC_003401.1 | + | 133593 | 0.73 | 0.301864 |
Target: 5'- cAGCCcuaguAGCAGGCaagcGGCCCcACUAGCAa -3' miRNA: 3'- uUCGG-----UCGUCCG----UCGGGaUGAUCGUc -5' |
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13096 | 3' | -58.5 | NC_003401.1 | + | 878 | 0.73 | 0.301864 |
Target: 5'- cAGCCcuaguAGCAGGCaagcGGCCCcACUAGCAa -3' miRNA: 3'- uUCGG-----UCGUCCG----UCGGGaUGAUCGUc -5' |
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13096 | 3' | -58.5 | NC_003401.1 | + | 919 | 0.73 | 0.301864 |
Target: 5'- cAGCUGGCcGGCAGCCCUACUcuguucucccAGCu- -3' miRNA: 3'- uUCGGUCGuCCGUCGGGAUGA----------UCGuc -5' |
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13096 | 3' | -58.5 | NC_003401.1 | + | 133634 | 0.73 | 0.301864 |
Target: 5'- cAGCUGGCcGGCAGCCCUACUcuguucucccAGCu- -3' miRNA: 3'- uUCGGUCGuCCGUCGGGAUGA----------UCGuc -5' |
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13096 | 3' | -58.5 | NC_003401.1 | + | 133377 | 0.82 | 0.085044 |
Target: 5'- cAGCCcuacuAGCAGcccaGCAGCCCUACUAGCAGc -3' miRNA: 3'- uUCGG-----UCGUC----CGUCGGGAUGAUCGUC- -5' |
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13096 | 3' | -58.5 | NC_003401.1 | + | 662 | 0.82 | 0.085044 |
Target: 5'- cAGCCcuacuAGCAGcccaGCAGCCCUACUAGCAGc -3' miRNA: 3'- uUCGG-----UCGUC----CGUCGGGAUGAUCGUC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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