miRNA display CGI


Results 1 - 20 of 38 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13097 3' -61.9 NC_003401.1 + 133650 1.11 0.000611
Target:  5'- cGGACGCCCUCGCACGCAGCUGGCCGGc -3'
miRNA:   3'- -CCUGCGGGAGCGUGCGUCGACCGGCC- -5'
13097 3' -61.9 NC_003401.1 + 132857 0.67 0.595202
Target:  5'- cGGgGCCCUCGguCGC-GCcccGcGCCGGg -3'
miRNA:   3'- cCUgCGGGAGCguGCGuCGa--C-CGGCC- -5'
13097 3' -61.9 NC_003401.1 + 132721 0.66 0.648252
Target:  5'- cGGcCGCCCggcaucgggagccgCGCGcCGCGGCUuguggggccccgGGcCCGGg -3'
miRNA:   3'- -CCuGCGGGa-------------GCGU-GCGUCGA------------CC-GGCC- -5'
13097 3' -61.9 NC_003401.1 + 132659 0.69 0.454237
Target:  5'- gGGGCGCgg-CGC-CGCcgGGCUcGGCCGGa -3'
miRNA:   3'- -CCUGCGggaGCGuGCG--UCGA-CCGGCC- -5'
13097 3' -61.9 NC_003401.1 + 132642 0.66 0.64432
Target:  5'- aGGugGUCUcCGCGcCGCcgggaGGggGGCCGGg -3'
miRNA:   3'- -CCugCGGGaGCGU-GCG-----UCgaCCGGCC- -5'
13097 3' -61.9 NC_003401.1 + 132535 0.72 0.312187
Target:  5'- ---gGCCCg-GCGCGCGGCgcggggcGGCCGGg -3'
miRNA:   3'- ccugCGGGagCGUGCGUCGa------CCGGCC- -5'
13097 3' -61.9 NC_003401.1 + 132508 0.66 0.654145
Target:  5'- gGGGCggcggccgcggGCCCggGCcgGCGgGGCggagGGCCGGg -3'
miRNA:   3'- -CCUG-----------CGGGagCG--UGCgUCGa---CCGGCC- -5'
13097 3' -61.9 NC_003401.1 + 132448 0.66 0.61482
Target:  5'- cGGCGCCCg-GCGCGCg---GGcCCGGg -3'
miRNA:   3'- cCUGCGGGagCGUGCGucgaCC-GGCC- -5'
13097 3' -61.9 NC_003401.1 + 132376 0.69 0.481153
Target:  5'- cGGcCGCCC-CGCGcCGCGcGCcgGGCCGc -3'
miRNA:   3'- -CCuGCGGGaGCGU-GCGU-CGa-CCGGCc -5'
13097 3' -61.9 NC_003401.1 + 132219 0.68 0.50882
Target:  5'- aGGCGCCCggccggCGC-CGCcGCcgGGCCGcGg -3'
miRNA:   3'- cCUGCGGGa-----GCGuGCGuCGa-CCGGC-C- -5'
13097 3' -61.9 NC_003401.1 + 126057 0.67 0.556314
Target:  5'- uGGCGCaCCUCGUcgACGU-GCUggGGCUGGa -3'
miRNA:   3'- cCUGCG-GGAGCG--UGCGuCGA--CCGGCC- -5'
13097 3' -61.9 NC_003401.1 + 121931 0.69 0.481153
Target:  5'- gGGGCGCgggUGCG-GCGGCUGGCgCGGc -3'
miRNA:   3'- -CCUGCGggaGCGUgCGUCGACCG-GCC- -5'
13097 3' -61.9 NC_003401.1 + 120706 0.68 0.527633
Target:  5'- -aGCGCCaCUgGuucUugGCAGCcGGCCGGu -3'
miRNA:   3'- ccUGCGG-GAgC---GugCGUCGaCCGGCC- -5'
13097 3' -61.9 NC_003401.1 + 119353 0.67 0.565977
Target:  5'- cGGugGCUCUCGCAaauggaaaagGCGGCccUGGUCa- -3'
miRNA:   3'- -CCugCGGGAGCGUg---------CGUCG--ACCGGcc -5'
13097 3' -61.9 NC_003401.1 + 116644 0.66 0.62465
Target:  5'- aGGGCGgUUggaCGCugGCGcGUUGGCCGu -3'
miRNA:   3'- -CCUGCgGGa--GCGugCGU-CGACCGGCc -5'
13097 3' -61.9 NC_003401.1 + 108870 0.68 0.546698
Target:  5'- cGGGC-CCUUCGgACGCGGgacuuCUGGCCu- -3'
miRNA:   3'- -CCUGcGGGAGCgUGCGUC-----GACCGGcc -5'
13097 3' -61.9 NC_003401.1 + 104880 0.66 0.641371
Target:  5'- gGGGCGCgCUgccgCGCACGUgaaggugauuggucAGuCUGGCCa- -3'
miRNA:   3'- -CCUGCG-GGa---GCGUGCG--------------UC-GACCGGcc -5'
13097 3' -61.9 NC_003401.1 + 100822 0.7 0.419663
Target:  5'- uGGugGUUCUCgGCACGCGuGCgaGGuuGGa -3'
miRNA:   3'- -CCugCGGGAG-CGUGCGU-CGa-CCggCC- -5'
13097 3' -61.9 NC_003401.1 + 92347 0.68 0.546698
Target:  5'- uGGACGaacccaaccuaCCCUCGUuccACGacaGGCUagagcaGGCCGGg -3'
miRNA:   3'- -CCUGC-----------GGGAGCG---UGCg--UCGA------CCGGCC- -5'
13097 3' -61.9 NC_003401.1 + 83405 0.66 0.639404
Target:  5'- uGGACaagguuuggcauuGCCg-UGCACGCGGCgaggauauggagcGGCCGGu -3'
miRNA:   3'- -CCUG-------------CGGgaGCGUGCGUCGa------------CCGGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.