miRNA display CGI


Results 1 - 20 of 40 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13099 5' -62.7 NC_003401.1 + 6280 0.71 0.328018
Target:  5'- cGACG-CUCGCCGUuaAGGUGACGUgCUUu -3'
miRNA:   3'- -CUGCgGAGCGGCA--UCCGCUGCGgGGG- -5'
13099 5' -62.7 NC_003401.1 + 10889 0.69 0.445428
Target:  5'- cGGCGCUUCGUCGcgcuucccugggAGGCG-CGCUgCCg -3'
miRNA:   3'- -CUGCGGAGCGGCa-----------UCCGCuGCGGgGG- -5'
13099 5' -62.7 NC_003401.1 + 10993 1.09 0.000666
Target:  5'- gGACGCCUCGCCGUAGGCGACGCCCCCc -3'
miRNA:   3'- -CUGCGGAGCGGCAUCCGCUGCGGGGG- -5'
13099 5' -62.7 NC_003401.1 + 13001 0.67 0.519744
Target:  5'- --gGCCaaGuUCGUGGGCGACGCCaucuCCg -3'
miRNA:   3'- cugCGGagC-GGCAUCCGCUGCGGg---GG- -5'
13099 5' -62.7 NC_003401.1 + 16309 0.66 0.606262
Target:  5'- cGCGUCUCgGUCGcgAGGUGAcCGCCCg- -3'
miRNA:   3'- cUGCGGAG-CGGCa-UCCGCU-GCGGGgg -5'
13099 5' -62.7 NC_003401.1 + 17495 0.68 0.464809
Target:  5'- cGACGCggaCG-CGgcGcGCGugGCCCCCg -3'
miRNA:   3'- -CUGCGga-GCgGCauC-CGCugCGGGGG- -5'
13099 5' -62.7 NC_003401.1 + 17880 0.69 0.413052
Target:  5'- aGACGCCUCGCCGgagacGcGCaGGgGUCCaCCg -3'
miRNA:   3'- -CUGCGGAGCGGCau---C-CG-CUgCGGG-GG- -5'
13099 5' -62.7 NC_003401.1 + 21231 0.68 0.501122
Target:  5'- uGAC-CCUCGuaGUuGGCGuCGgCCCCCc -3'
miRNA:   3'- -CUGcGGAGCggCAuCCGCuGC-GGGGG- -5'
13099 5' -62.7 NC_003401.1 + 23369 0.69 0.43677
Target:  5'- uGGCGCCUguUGCUGUuuguguuaacccGGCGuuUGCCCCCu -3'
miRNA:   3'- -CUGCGGA--GCGGCAu-----------CCGCu-GCGGGGG- -5'
13099 5' -62.7 NC_003401.1 + 23637 0.69 0.447172
Target:  5'- gGGCGCCgcgagCgGCCGgcAGGUGGCGCcgcgcuuucCCCCa -3'
miRNA:   3'- -CUGCGGa----G-CGGCa-UCCGCUGCG---------GGGG- -5'
13099 5' -62.7 NC_003401.1 + 23800 0.67 0.548163
Target:  5'- cGGCGCCaccUGCCGgccgcucGCGGCGCCCg- -3'
miRNA:   3'- -CUGCGGa--GCGGCauc----CGCUGCGGGgg -5'
13099 5' -62.7 NC_003401.1 + 32256 0.66 0.600401
Target:  5'- cACGUCUccguccggaaCGCCGUGGGaauuacugcacccgGACGCCCUg -3'
miRNA:   3'- cUGCGGA----------GCGGCAUCCg-------------CUGCGGGGg -5'
13099 5' -62.7 NC_003401.1 + 36964 0.69 0.403133
Target:  5'- aGACGUaCUCGCCGUuGGauagcugcacCGCCCCCc -3'
miRNA:   3'- -CUGCG-GAGCGGCAuCCgcu-------GCGGGGG- -5'
13099 5' -62.7 NC_003401.1 + 46775 0.66 0.567378
Target:  5'- -uCGCCUCGUCGauauauaggAGGUGGaacgucUGUCCCCg -3'
miRNA:   3'- cuGCGGAGCGGCa--------UCCGCU------GCGGGGG- -5'
13099 5' -62.7 NC_003401.1 + 51739 0.66 0.603331
Target:  5'- cGAgGCCUCGaaCGgcGGgGACGguucaguuucaagaCCCCCa -3'
miRNA:   3'- -CUgCGGAGCg-GCauCCgCUGC--------------GGGGG- -5'
13099 5' -62.7 NC_003401.1 + 82259 0.68 0.455944
Target:  5'- -cCGcCCUCgGgUGUAGGU-ACGCCCCCa -3'
miRNA:   3'- cuGC-GGAG-CgGCAUCCGcUGCGGGGG- -5'
13099 5' -62.7 NC_003401.1 + 87150 0.66 0.58676
Target:  5'- --gGCCUUGCuCGgcGGUGucaGCUCCCu -3'
miRNA:   3'- cugCGGAGCG-GCauCCGCug-CGGGGG- -5'
13099 5' -62.7 NC_003401.1 + 87879 0.67 0.53768
Target:  5'- cACGgCUCGCCuuccggaGUGGGa-ACGCCUCCu -3'
miRNA:   3'- cUGCgGAGCGG-------CAUCCgcUGCGGGGG- -5'
13099 5' -62.7 NC_003401.1 + 88259 0.7 0.369634
Target:  5'- uGGCGCCggcaacaggcgaaCGCCGuUGGGCGACccgaCCUCCa -3'
miRNA:   3'- -CUGCGGa------------GCGGC-AUCCGCUGc---GGGGG- -5'
13099 5' -62.7 NC_003401.1 + 89672 0.67 0.529156
Target:  5'- --aGCCUcCGCCGgagcgggaggAGGCaggGGCGUCCCUg -3'
miRNA:   3'- cugCGGA-GCGGCa---------UCCG---CUGCGGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.