miRNA display CGI


Results 1 - 20 of 40 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13099 5' -62.7 NC_003401.1 + 119778 0.67 0.557747
Target:  5'- cGACgGCCUCcgccaaucugGCCGgAGGCGGCGCagcggcaCCg -3'
miRNA:   3'- -CUG-CGGAG----------CGGCaUCCGCUGCGgg-----GG- -5'
13099 5' -62.7 NC_003401.1 + 118655 0.68 0.482801
Target:  5'- uGAgGUgUCGCCgGUGGGcCGuAUGaCCCCCg -3'
miRNA:   3'- -CUgCGgAGCGG-CAUCC-GC-UGC-GGGGG- -5'
13099 5' -62.7 NC_003401.1 + 132252 0.68 0.482801
Target:  5'- -cCGCCaucuugCGCCcgGGGCGagggucccccgcGCGCCCCCc -3'
miRNA:   3'- cuGCGGa-----GCGGcaUCCGC------------UGCGGGGG- -5'
13099 5' -62.7 NC_003401.1 + 132681 0.68 0.497433
Target:  5'- gGGCGCCUCGgCGgggcccggcgcggGGcGCGACcgaggGCCCCg -3'
miRNA:   3'- -CUGCGGAGCgGCa------------UC-CGCUG-----CGGGGg -5'
13099 5' -62.7 NC_003401.1 + 21231 0.68 0.501122
Target:  5'- uGAC-CCUCGuaGUuGGCGuCGgCCCCCc -3'
miRNA:   3'- -CUGcGGAGCggCAuCCGCuGC-GGGGG- -5'
13099 5' -62.7 NC_003401.1 + 13001 0.67 0.519744
Target:  5'- --gGCCaaGuUCGUGGGCGACGCCaucuCCg -3'
miRNA:   3'- cugCGGagC-GGCAUCCGCUGCGGg---GG- -5'
13099 5' -62.7 NC_003401.1 + 89672 0.67 0.529156
Target:  5'- --aGCCUcCGCCGgagcgggaggAGGCaggGGCGUCCCUg -3'
miRNA:   3'- cugCGGA-GCGGCa---------UCCG---CUGCGGGGG- -5'
13099 5' -62.7 NC_003401.1 + 87879 0.67 0.53768
Target:  5'- cACGgCUCGCCuuccggaGUGGGa-ACGCCUCCu -3'
miRNA:   3'- cUGCgGAGCGG-------CAUCCgcUGCGGGGG- -5'
13099 5' -62.7 NC_003401.1 + 127829 0.67 0.548163
Target:  5'- -uCGCCUCGCUGguGGUGGCGCUgUg -3'
miRNA:   3'- cuGCGGAGCGGCauCCGCUGCGGgGg -5'
13099 5' -62.7 NC_003401.1 + 17495 0.68 0.464809
Target:  5'- cGACGCggaCG-CGgcGcGCGugGCCCCCg -3'
miRNA:   3'- -CUGCGga-GCgGCauC-CGCugCGGGGG- -5'
13099 5' -62.7 NC_003401.1 + 82259 0.68 0.455944
Target:  5'- -cCGcCCUCgGgUGUAGGU-ACGCCCCCa -3'
miRNA:   3'- cuGC-GGAG-CgGCAUCCGcUGCGGGGG- -5'
13099 5' -62.7 NC_003401.1 + 23637 0.69 0.447172
Target:  5'- gGGCGCCgcgagCgGCCGgcAGGUGGCGCcgcgcuuucCCCCa -3'
miRNA:   3'- -CUGCGGa----G-CGGCa-UCCGCUGCG---------GGGG- -5'
13099 5' -62.7 NC_003401.1 + 94584 0.71 0.314019
Target:  5'- cGCGCCUaaCGCUcucgGUAGGCGcCGUCCCg -3'
miRNA:   3'- cUGCGGA--GCGG----CAUCCGCuGCGGGGg -5'
13099 5' -62.7 NC_003401.1 + 6280 0.71 0.328018
Target:  5'- cGACG-CUCGCCGUuaAGGUGACGUgCUUu -3'
miRNA:   3'- -CUGCgGAGCGGCA--UCCGCUGCGgGGG- -5'
13099 5' -62.7 NC_003401.1 + 88259 0.7 0.369634
Target:  5'- uGGCGCCggcaacaggcgaaCGCCGuUGGGCGACccgaCCUCCa -3'
miRNA:   3'- -CUGCGGa------------GCGGC-AUCCGCUGc---GGGGG- -5'
13099 5' -62.7 NC_003401.1 + 36964 0.69 0.403133
Target:  5'- aGACGUaCUCGCCGUuGGauagcugcacCGCCCCCc -3'
miRNA:   3'- -CUGCG-GAGCGGCAuCCgcu-------GCGGGGG- -5'
13099 5' -62.7 NC_003401.1 + 118727 0.69 0.404776
Target:  5'- --gGCCgCGCCGcuuGGCGGCGCggcuuccucCCCCa -3'
miRNA:   3'- cugCGGaGCGGCau-CCGCUGCG---------GGGG- -5'
13099 5' -62.7 NC_003401.1 + 132341 0.69 0.421432
Target:  5'- -cCGCCcCGCCGgcccGGGCccgcggccGcCGCCCCCg -3'
miRNA:   3'- cuGCGGaGCGGCa---UCCG--------CuGCGGGGG- -5'
13099 5' -62.7 NC_003401.1 + 111917 0.69 0.426508
Target:  5'- uGGCGUCUcgagCGCCGUacgcaccuagcgucAGGCGACcggacggGCCCCa -3'
miRNA:   3'- -CUGCGGA----GCGGCA--------------UCCGCUG-------CGGGGg -5'
13099 5' -62.7 NC_003401.1 + 10889 0.69 0.445428
Target:  5'- cGGCGCUUCGUCGcgcuucccugggAGGCG-CGCUgCCg -3'
miRNA:   3'- -CUGCGGAGCGGCa-----------UCCGCuGCGGgGG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.