miRNA display CGI


Results 1 - 20 of 33 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13100 5' -58.8 NC_003401.1 + 132494 0.71 0.491705
Target:  5'- gGGCCcggGCCggCGggGCGgaGGGCCGGg- -3'
miRNA:   3'- -CCGG---CGGa-GCuuUGUgaCCCGGUCgc -5'
13100 5' -58.8 NC_003401.1 + 45049 0.75 0.295251
Target:  5'- aGGCCGCCUUu-AACA--GGGCCAGCc -3'
miRNA:   3'- -CCGGCGGAGcuUUGUgaCCCGGUCGc -5'
13100 5' -58.8 NC_003401.1 + 11249 1.1 0.001217
Target:  5'- cGGCCGCCUCGAAACACUGGGCCAGCGc -3'
miRNA:   3'- -CCGGCGGAGCUUUGUGACCCGGUCGC- -5'
13100 5' -58.8 NC_003401.1 + 42363 0.67 0.720058
Target:  5'- gGGCCGgggggaCguuaaacgCGAccggcacGCGCUGGGCCGGCa -3'
miRNA:   3'- -CCGGCg-----Ga-------GCUu------UGUGACCCGGUCGc -5'
13100 5' -58.8 NC_003401.1 + 119247 0.67 0.690384
Target:  5'- uGGCCGCCaacgcaccCGGuuAACGCcGGuGCCGGCc -3'
miRNA:   3'- -CCGGCGGa-------GCU--UUGUGaCC-CGGUCGc -5'
13100 5' -58.8 NC_003401.1 + 105478 0.68 0.650194
Target:  5'- gGGCCGUUUUu-GAC-CUGGGCCucuAGCGu -3'
miRNA:   3'- -CCGGCGGAGcuUUGuGACCCGG---UCGC- -5'
13100 5' -58.8 NC_003401.1 + 105045 0.66 0.767926
Target:  5'- gGGCCGU--CGGAAC-CgGGGUUAGCGu -3'
miRNA:   3'- -CCGGCGgaGCUUUGuGaCCCGGUCGC- -5'
13100 5' -58.8 NC_003401.1 + 118012 0.67 0.739488
Target:  5'- cGGCCGCuCUUu-GGCGCcgGGGucguCCGGCGg -3'
miRNA:   3'- -CCGGCG-GAGcuUUGUGa-CCC----GGUCGC- -5'
13100 5' -58.8 NC_003401.1 + 75095 0.67 0.700334
Target:  5'- cGCCGCCUgG--GCGCUuGGCgGGCa -3'
miRNA:   3'- cCGGCGGAgCuuUGUGAcCCGgUCGc -5'
13100 5' -58.8 NC_003401.1 + 21460 0.69 0.619875
Target:  5'- gGGaCCGCCgCGAgGGCGaucugGGGCCGGUGu -3'
miRNA:   3'- -CC-GGCGGaGCU-UUGUga---CCCGGUCGC- -5'
13100 5' -58.8 NC_003401.1 + 69737 0.7 0.510771
Target:  5'- cGGCCGCCaugCGGGACuCUGGaguGUUGGCGa -3'
miRNA:   3'- -CCGGCGGa--GCUUUGuGACC---CGGUCGC- -5'
13100 5' -58.8 NC_003401.1 + 44037 0.66 0.78631
Target:  5'- aGCaGCUUCuGAAGCACUGuuugaGCCAGUGg -3'
miRNA:   3'- cCGgCGGAG-CUUUGUGACc----CGGUCGC- -5'
13100 5' -58.8 NC_003401.1 + 132650 0.69 0.590641
Target:  5'- cGCCGCCgggcucggccggacCGggGCGCUcccgggagucggccGGGCCcGGCGg -3'
miRNA:   3'- cCGGCGGa-------------GCuuUGUGA--------------CCCGG-UCGC- -5'
13100 5' -58.8 NC_003401.1 + 17629 0.67 0.739488
Target:  5'- cGCCGCCggaauccaaCGggGCGauaaGGGCCAcGCa -3'
miRNA:   3'- cCGGCGGa--------GCuuUGUga--CCCGGU-CGc -5'
13100 5' -58.8 NC_003401.1 + 28665 0.73 0.377129
Target:  5'- cGGCC-CCUCuuGAGACACUGauGGCCAagGCGa -3'
miRNA:   3'- -CCGGcGGAG--CUUUGUGAC--CCGGU--CGC- -5'
13100 5' -58.8 NC_003401.1 + 30365 0.66 0.748117
Target:  5'- aGG-CGCCggUGggGCGaucugggugugauUUGGGCCAGCu -3'
miRNA:   3'- -CCgGCGGa-GCuuUGU-------------GACCCGGUCGc -5'
13100 5' -58.8 NC_003401.1 + 16689 0.67 0.710229
Target:  5'- cGGCCGCCgcacgCGguAUACgaggagGGGCUgccGGCu -3'
miRNA:   3'- -CCGGCGGa----GCuuUGUGa-----CCCGG---UCGc -5'
13100 5' -58.8 NC_003401.1 + 124253 0.67 0.690384
Target:  5'- cGCCGCC-CGugggucAAGCACgGGGCCuccGGCu -3'
miRNA:   3'- cCGGCGGaGC------UUUGUGaCCCGG---UCGc -5'
13100 5' -58.8 NC_003401.1 + 132206 0.68 0.680386
Target:  5'- cGGCCggGCC-CgGAGGCGCccGGCCGGCGc -3'
miRNA:   3'- -CCGG--CGGaG-CUUUGUGacCCGGUCGC- -5'
13100 5' -58.8 NC_003401.1 + 87969 0.69 0.609777
Target:  5'- -aCCGCaCUC-AGAUAUUGGGCgAGCGa -3'
miRNA:   3'- ccGGCG-GAGcUUUGUGACCCGgUCGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.