Results 21 - 33 of 33 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
13100 | 5' | -58.8 | NC_003401.1 | + | 87969 | 0.69 | 0.609777 |
Target: 5'- -aCCGCaCUC-AGAUAUUGGGCgAGCGa -3' miRNA: 3'- ccGGCG-GAGcUUUGUGACCCGgUCGC- -5' |
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13100 | 5' | -58.8 | NC_003401.1 | + | 132650 | 0.69 | 0.590641 |
Target: 5'- cGCCGCCgggcucggccggacCGggGCGCUcccgggagucggccGGGCCcGGCGg -3' miRNA: 3'- cCGGCGGa-------------GCuuUGUGA--------------CCCGG-UCGC- -5' |
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13100 | 5' | -58.8 | NC_003401.1 | + | 118374 | 0.69 | 0.579609 |
Target: 5'- cGGCUcgGCCUgCGGcGACGCUGacGCCGGCGg -3' miRNA: 3'- -CCGG--CGGA-GCU-UUGUGACc-CGGUCGC- -5' |
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13100 | 5' | -58.8 | NC_003401.1 | + | 132668 | 0.69 | 0.569617 |
Target: 5'- gGGCCgggGCC-CGggGCGCcucggcgGGGCcCGGCGc -3' miRNA: 3'- -CCGG---CGGaGCuuUGUGa------CCCG-GUCGC- -5' |
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13100 | 5' | -58.8 | NC_003401.1 | + | 69737 | 0.7 | 0.510771 |
Target: 5'- cGGCCGCCaugCGGGACuCUGGaguGUUGGCGa -3' miRNA: 3'- -CCGGCGGa--GCUUUGuGACC---CGGUCGC- -5' |
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13100 | 5' | -58.8 | NC_003401.1 | + | 14236 | 0.7 | 0.510771 |
Target: 5'- cGCCuGCCUCcGAACGCcagGGGCaGGCGg -3' miRNA: 3'- cCGG-CGGAGcUUUGUGa--CCCGgUCGC- -5' |
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13100 | 5' | -58.8 | NC_003401.1 | + | 132494 | 0.71 | 0.491705 |
Target: 5'- gGGCCcggGCCggCGggGCGgaGGGCCGGg- -3' miRNA: 3'- -CCGG---CGGa-GCuuUGUgaCCCGGUCgc -5' |
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13100 | 5' | -58.8 | NC_003401.1 | + | 127538 | 0.71 | 0.491705 |
Target: 5'- aGGCCGCCccgCGAGAC-CaGGGCUcccaGGUGg -3' miRNA: 3'- -CCGGCGGa--GCUUUGuGaCCCGG----UCGC- -5' |
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13100 | 5' | -58.8 | NC_003401.1 | + | 43154 | 0.72 | 0.436637 |
Target: 5'- cGGcCCGCCUCacgGGAACGCcGGcGaCCAGCGc -3' miRNA: 3'- -CC-GGCGGAG---CUUUGUGaCC-C-GGUCGC- -5' |
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13100 | 5' | -58.8 | NC_003401.1 | + | 28665 | 0.73 | 0.377129 |
Target: 5'- cGGCC-CCUCuuGAGACACUGauGGCCAagGCGa -3' miRNA: 3'- -CCGGcGGAG--CUUUGUGAC--CCGGU--CGC- -5' |
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13100 | 5' | -58.8 | NC_003401.1 | + | 45049 | 0.75 | 0.295251 |
Target: 5'- aGGCCGCCUUu-AACA--GGGCCAGCc -3' miRNA: 3'- -CCGGCGGAGcuUUGUgaCCCGGUCGc -5' |
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13100 | 5' | -58.8 | NC_003401.1 | + | 132398 | 0.76 | 0.244863 |
Target: 5'- gGGCCGCUuUCGGuuCGCgGGGCCGGgGg -3' miRNA: 3'- -CCGGCGG-AGCUuuGUGaCCCGGUCgC- -5' |
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13100 | 5' | -58.8 | NC_003401.1 | + | 11249 | 1.1 | 0.001217 |
Target: 5'- cGGCCGCCUCGAAACACUGGGCCAGCGc -3' miRNA: 3'- -CCGGCGGAGCUUUGUGACCCGGUCGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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