miRNA display CGI


Results 1 - 20 of 26 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13102 3' -62.7 NC_003401.1 + 132534 0.66 0.627662
Target:  5'- gCCCGgCgcgcgGCgCggGGCGgcCGGGGGCg -3'
miRNA:   3'- -GGGCgGa----CGgGgaCCGCaaGCCUCCG- -5'
13102 3' -62.7 NC_003401.1 + 132655 0.66 0.609076
Target:  5'- gCCGCCgggaggggggccgggGCCCggGGCGccUCGGcgGGGCc -3'
miRNA:   3'- gGGCGGa--------------CGGGgaCCGCa-AGCC--UCCG- -5'
13102 3' -62.7 NC_003401.1 + 132444 0.66 0.608099
Target:  5'- gCCCGgCgcgcggGCCCggggGGCGcgCGGGGGa -3'
miRNA:   3'- -GGGCgGa-----CGGGga--CCGCaaGCCUCCg -5'
13102 3' -62.7 NC_003401.1 + 91633 0.66 0.605169
Target:  5'- -aCGCaCUGCUCUUuuaaguccaggucaGGCGUucUCGGAGGg -3'
miRNA:   3'- ggGCG-GACGGGGA--------------CCGCA--AGCCUCCg -5'
13102 3' -62.7 NC_003401.1 + 132499 0.66 0.598339
Target:  5'- gCCGCggGCCCgggccGGCGgggCGGAGGg -3'
miRNA:   3'- gGGCGgaCGGGga---CCGCaa-GCCUCCg -5'
13102 3' -62.7 NC_003401.1 + 106913 0.66 0.598339
Target:  5'- aCCGUgguggUUGCCUCUGGUuggCGaGAGGCu -3'
miRNA:   3'- gGGCG-----GACGGGGACCGcaaGC-CUCCG- -5'
13102 3' -62.7 NC_003401.1 + 14233 0.66 0.598339
Target:  5'- cCCCGCCUGCCuCCgaacGCcaggGGcAGGCg -3'
miRNA:   3'- -GGGCGGACGG-GGac--CGcaagCC-UCCG- -5'
13102 3' -62.7 NC_003401.1 + 89666 0.66 0.588601
Target:  5'- aCCGUCaGCCuCCgccgGaGCGggaGGAGGCa -3'
miRNA:   3'- gGGCGGaCGG-GGa---C-CGCaagCCUCCG- -5'
13102 3' -62.7 NC_003401.1 + 132828 0.66 0.584714
Target:  5'- cCCCGCCgaggcgccccggGCCCCggccccccucccGGCGgcgCGGAGa- -3'
miRNA:   3'- -GGGCGGa-----------CGGGGa-----------CCGCaa-GCCUCcg -5'
13102 3' -62.7 NC_003401.1 + 127721 0.66 0.578893
Target:  5'- aCCCGCCUcugucaucgGCCaCCUGGgagcccUGgucUCGcGGGGCg -3'
miRNA:   3'- -GGGCGGA---------CGG-GGACC------GCa--AGC-CUCCG- -5'
13102 3' -62.7 NC_003401.1 + 68073 0.66 0.569219
Target:  5'- aCUCaGUaCUGCCCCUGGUGgaUGcGGGCu -3'
miRNA:   3'- -GGG-CG-GACGGGGACCGCaaGCcUCCG- -5'
13102 3' -62.7 NC_003401.1 + 132808 0.66 0.569219
Target:  5'- gCCUGCCUGCUCgCUGGCcugcuugCuGAGGg -3'
miRNA:   3'- -GGGCGGACGGG-GACCGcaa----GcCUCCg -5'
13102 3' -62.7 NC_003401.1 + 73 0.66 0.569219
Target:  5'- gCCUGCCUGCUCgCUGGCcugcuugCuGAGGg -3'
miRNA:   3'- -GGGCGGACGGG-GACCGcaa----GcCUCCg -5'
13102 3' -62.7 NC_003401.1 + 48499 0.67 0.553828
Target:  5'- aCgCGCCUGCgCCCacgucuuuggauaguUGGCuuGUUUGGgaGGGCg -3'
miRNA:   3'- -GgGCGGACG-GGG---------------ACCG--CAAGCC--UCCG- -5'
13102 3' -62.7 NC_003401.1 + 91114 0.67 0.544271
Target:  5'- cCCCGguguuuuugCUGCCCCUGGUGgccuuuauaguaGGuGGCg -3'
miRNA:   3'- -GGGCg--------GACGGGGACCGCaag---------CCuCCG- -5'
13102 3' -62.7 NC_003401.1 + 119493 0.68 0.502929
Target:  5'- gCCCGUUUGCaaacCCCUcgGGCGUaucgUCGGAcgccGGCc -3'
miRNA:   3'- -GGGCGGACG----GGGA--CCGCA----AGCCU----CCG- -5'
13102 3' -62.7 NC_003401.1 + 17707 0.68 0.457699
Target:  5'- gCCUGCCcggugGaCCCCUGcGCGUcucCGGcgAGGCg -3'
miRNA:   3'- -GGGCGGa----C-GGGGAC-CGCAa--GCC--UCCG- -5'
13102 3' -62.7 NC_003401.1 + 29564 0.69 0.443687
Target:  5'- gUCGCCUGCUuguggcacugagcuaCUguuUGGCGUUuUGGGGGCa -3'
miRNA:   3'- gGGCGGACGG---------------GG---ACCGCAA-GCCUCCG- -5'
13102 3' -62.7 NC_003401.1 + 18022 0.69 0.431628
Target:  5'- aCCCGuCCUGCCCacccacaccGGCGgccgcguaUUGGGGGUc -3'
miRNA:   3'- -GGGC-GGACGGGga-------CCGCa-------AGCCUCCG- -5'
13102 3' -62.7 NC_003401.1 + 15937 0.69 0.423132
Target:  5'- gCCCcCCUGUCCCUcgGGCGUUggaaccgGGAGGa -3'
miRNA:   3'- -GGGcGGACGGGGA--CCGCAAg------CCUCCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.