miRNA display CGI


Results 21 - 34 of 34 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13103 3' -66 NC_003401.1 + 76607 0.66 0.410095
Target:  5'- cUCUGGCauuuaCGCCaagGGGCGauGCGUGcGCGUa -3'
miRNA:   3'- -AGACCG-----GCGG---UCCGCccCGCAC-CGCG- -5'
13103 3' -66 NC_003401.1 + 105363 0.71 0.223259
Target:  5'- --cGGCCGCCAGG-GuGGGCcacaUGGCGg -3'
miRNA:   3'- agaCCGGCGGUCCgC-CCCGc---ACCGCg -5'
13103 3' -66 NC_003401.1 + 105983 0.72 0.176507
Target:  5'- cCUGGCCa--AGGCGcuuGGGCGUGGcCGCc -3'
miRNA:   3'- aGACCGGcggUCCGC---CCCGCACC-GCG- -5'
13103 3' -66 NC_003401.1 + 115734 0.66 0.441941
Target:  5'- -gUGGCU-CCGGGUGGGGgCGgcucggcuccggGGUGCu -3'
miRNA:   3'- agACCGGcGGUCCGCCCC-GCa-----------CCGCG- -5'
13103 3' -66 NC_003401.1 + 119947 0.69 0.285148
Target:  5'- gCUGcGCCGCCuccggccagauuGGCGGaGGCcGUcGGCGUu -3'
miRNA:   3'- aGAC-CGGCGGu-----------CCGCC-CCG-CA-CCGCG- -5'
13103 3' -66 NC_003401.1 + 121358 0.68 0.347203
Target:  5'- cCUGGCCgagacgGCCcGGUGGGGUggucuguGUGGCu- -3'
miRNA:   3'- aGACCGG------CGGuCCGCCCCG-------CACCGcg -5'
13103 3' -66 NC_003401.1 + 121931 0.68 0.340655
Target:  5'- --gGGgCGCgGGuGCGGcGGC-UGGCGCg -3'
miRNA:   3'- agaCCgGCGgUC-CGCC-CCGcACCGCG- -5'
13103 3' -66 NC_003401.1 + 122123 0.69 0.2673
Target:  5'- --aGGCCGggAGGCgcggcagGGGGCGUGGCa- -3'
miRNA:   3'- agaCCGGCggUCCG-------CCCCGCACCGcg -5'
13103 3' -66 NC_003401.1 + 132387 0.71 0.223259
Target:  5'- --cGGCCGCgGcccGGCGGcGGCGccggccgGGCGCc -3'
miRNA:   3'- agaCCGGCGgU---CCGCC-CCGCa------CCGCG- -5'
13103 3' -66 NC_003401.1 + 132501 0.7 0.23921
Target:  5'- --cGGCCGCgGgcccgggccGGCGGGGCGgagGGC-Cg -3'
miRNA:   3'- agaCCGGCGgU---------CCGCCCCGCa--CCGcG- -5'
13103 3' -66 NC_003401.1 + 132536 0.69 0.286413
Target:  5'- --cGGCCcggcGCgCGGcGCGGGGCGgccgGGgGCg -3'
miRNA:   3'- agaCCGG----CG-GUC-CGCCCCGCa---CCgCG- -5'
13103 3' -66 NC_003401.1 + 132649 0.66 0.43512
Target:  5'- cUCcGcGCCGCCGGGaggGGGGCc-GGgGCc -3'
miRNA:   3'- -AGaC-CGGCGGUCCg--CCCCGcaCCgCG- -5'
13103 3' -66 NC_003401.1 + 132680 0.75 0.108402
Target:  5'- --gGGgCGCCucGGCGGGGCccGGCGCg -3'
miRNA:   3'- agaCCgGCGGu-CCGCCCCGcaCCGCG- -5'
13103 3' -66 NC_003401.1 + 132682 0.75 0.105741
Target:  5'- --gGGCC-CCGGGCccggGGGGCGUcggGGCGCg -3'
miRNA:   3'- agaCCGGcGGUCCG----CCCCGCA---CCGCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.