miRNA display CGI


Results 21 - 34 of 34 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13103 3' -66 NC_003401.1 + 18184 0.68 0.333485
Target:  5'- --cGGCCGCC-GGUGuGGGUG-GGCa- -3'
miRNA:   3'- agaCCGGCGGuCCGC-CCCGCaCCGcg -5'
13103 3' -66 NC_003401.1 + 23765 0.68 0.340655
Target:  5'- uUUUGGCCugcuGCCAGGUGGcagcCGUccaGGCGCg -3'
miRNA:   3'- -AGACCGG----CGGUCCGCCcc--GCA---CCGCG- -5'
13103 3' -66 NC_003401.1 + 69737 0.67 0.370439
Target:  5'- --cGGCCGCCAuGCGGGacucuggaGUGuUGGCGa -3'
miRNA:   3'- agaCCGGCGGUcCGCCC--------CGC-ACCGCg -5'
13103 3' -66 NC_003401.1 + 14172 0.67 0.385984
Target:  5'- aUUGGCCGCgcggcucuggCGGGCGGcaaguacaGGCGUgugGGUGUg -3'
miRNA:   3'- aGACCGGCG----------GUCCGCC--------CCGCA---CCGCG- -5'
13103 3' -66 NC_003401.1 + 122123 0.69 0.2673
Target:  5'- --aGGCCGggAGGCgcggcagGGGGCGUGGCa- -3'
miRNA:   3'- agaCCGGCggUCCG-------CCCCGCACCGcg -5'
13103 3' -66 NC_003401.1 + 22778 0.7 0.256103
Target:  5'- -gUGGCCGagCAcGGCGa-GCGUGGCGCu -3'
miRNA:   3'- agACCGGCg-GU-CCGCccCGCACCGCG- -5'
13103 3' -66 NC_003401.1 + 132501 0.7 0.23921
Target:  5'- --cGGCCGCgGgcccgggccGGCGGGGCGgagGGC-Cg -3'
miRNA:   3'- agaCCGGCGgU---------CCGCCCCGCa--CCGcG- -5'
13103 3' -66 NC_003401.1 + 132387 0.71 0.223259
Target:  5'- --cGGCCGCgGcccGGCGGcGGCGccggccgGGCGCc -3'
miRNA:   3'- agaCCGGCGgU---CCGCC-CCGCa------CCGCG- -5'
13103 3' -66 NC_003401.1 + 105363 0.71 0.223259
Target:  5'- --cGGCCGCCAGG-GuGGGCcacaUGGCGg -3'
miRNA:   3'- agaCCGGCGGUCCgC-CCCGc---ACCGCg -5'
13103 3' -66 NC_003401.1 + 105983 0.72 0.176507
Target:  5'- cCUGGCCa--AGGCGcuuGGGCGUGGcCGCc -3'
miRNA:   3'- aGACCGGcggUCCGC---CCCGCACC-GCG- -5'
13103 3' -66 NC_003401.1 + 17014 0.73 0.156555
Target:  5'- uUUUGGuacaCCGCCAGGUGGGGCagguUGGUGg -3'
miRNA:   3'- -AGACC----GGCGGUCCGCCCCGc---ACCGCg -5'
13103 3' -66 NC_003401.1 + 132682 0.75 0.105741
Target:  5'- --gGGCC-CCGGGCccggGGGGCGUcggGGCGCg -3'
miRNA:   3'- agaCCGGcGGUCCG----CCCCGCA---CCGCG- -5'
13103 3' -66 NC_003401.1 + 15041 1.11 0.000243
Target:  5'- cUCUGGCCGCCAGGCGGGGCGUGGCGCg -3'
miRNA:   3'- -AGACCGGCGGUCCGCCCCGCACCGCG- -5'
13103 3' -66 NC_003401.1 + 43318 0.66 0.443656
Target:  5'- gCUGGUCGCC-GGCGuucccgugaGGCG-GGcCGCg -3'
miRNA:   3'- aGACCGGCGGuCCGCc--------CCGCaCC-GCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.