miRNA display CGI


Results 1 - 20 of 31 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13103 5' -51.1 NC_003401.1 + 15007 1.14 0.004092
Target:  5'- cGAGUACCACCCGAACGUGGUAAACCCg -3'
miRNA:   3'- -CUCAUGGUGGGCUUGCACCAUUUGGG- -5'
13103 5' -51.1 NC_003401.1 + 123225 0.76 0.6624
Target:  5'- -cGUGCCGCCCGAGCuGUGcagcGAACCUg -3'
miRNA:   3'- cuCAUGGUGGGCUUG-CACca--UUUGGG- -5'
13103 5' -51.1 NC_003401.1 + 1593 0.75 0.72484
Target:  5'- aGGUAUCuCCgGGAUGUGGUGGACaCCa -3'
miRNA:   3'- cUCAUGGuGGgCUUGCACCAUUUG-GG- -5'
13103 5' -51.1 NC_003401.1 + 64379 0.74 0.735007
Target:  5'- cGGUACCGCCCGggUacGG-AGGCCCc -3'
miRNA:   3'- cUCAUGGUGGGCuuGcaCCaUUUGGG- -5'
13103 5' -51.1 NC_003401.1 + 56627 0.74 0.755044
Target:  5'- uGAGUGCCAccuCCCGGGCGUucauGGUGccguGGCUCa -3'
miRNA:   3'- -CUCAUGGU---GGGCUUGCA----CCAU----UUGGG- -5'
13103 5' -51.1 NC_003401.1 + 108603 0.72 0.846705
Target:  5'- -cGUGCCAgcUCCGAGgGUGGUGGuguGCCUc -3'
miRNA:   3'- cuCAUGGU--GGGCUUgCACCAUU---UGGG- -5'
13103 5' -51.1 NC_003401.1 + 133709 0.71 0.885297
Target:  5'- cGGGUGCCcggcggUCCGGGCGgGGgagAGGCCCg -3'
miRNA:   3'- -CUCAUGGu-----GGGCUUGCaCCa--UUUGGG- -5'
13103 5' -51.1 NC_003401.1 + 79899 0.71 0.90563
Target:  5'- aGGUACCGgCgGGACG-GGUAcgaaguAGCCCg -3'
miRNA:   3'- cUCAUGGUgGgCUUGCaCCAU------UUGGG- -5'
13103 5' -51.1 NC_003401.1 + 44177 0.7 0.917938
Target:  5'- uGGUGCCACCUGA----GGUAcaGGCCCu -3'
miRNA:   3'- cUCAUGGUGGGCUugcaCCAU--UUGGG- -5'
13103 5' -51.1 NC_003401.1 + 10824 0.69 0.939499
Target:  5'- cGGuUGCCGCCaCGGugGUGGUccguGGCuCCg -3'
miRNA:   3'- cUC-AUGGUGG-GCUugCACCAu---UUG-GG- -5'
13103 5' -51.1 NC_003401.1 + 128529 0.69 0.953012
Target:  5'- cGGGUACC-CCCGGGCaccuUGGcc-GCCCu -3'
miRNA:   3'- -CUCAUGGuGGGCUUGc---ACCauuUGGG- -5'
13103 5' -51.1 NC_003401.1 + 21362 0.69 0.957022
Target:  5'- gGGGUggACCAgCUGcguuACGUGGUGGAUCUa -3'
miRNA:   3'- -CUCA--UGGUgGGCu---UGCACCAUUUGGG- -5'
13103 5' -51.1 NC_003401.1 + 73910 0.68 0.964328
Target:  5'- uGGGU-CCAUuuGGucGCGUcgacGGUAAGCCCc -3'
miRNA:   3'- -CUCAuGGUGggCU--UGCA----CCAUUUGGG- -5'
13103 5' -51.1 NC_003401.1 + 107896 0.68 0.967634
Target:  5'- cGGGUccggcucgGCCGcCCCGAGCGUugccccGGUGGccuccACCCu -3'
miRNA:   3'- -CUCA--------UGGU-GGGCUUGCA------CCAUU-----UGGG- -5'
13103 5' -51.1 NC_003401.1 + 125857 0.68 0.970717
Target:  5'- aGAGUuCCugCgCGGGCGUGaagcUGGGCCCc -3'
miRNA:   3'- -CUCAuGGugG-GCUUGCACc---AUUUGGG- -5'
13103 5' -51.1 NC_003401.1 + 17716 0.68 0.970717
Target:  5'- -uGUGCCGCCCGcuCGc-GUuuACCCa -3'
miRNA:   3'- cuCAUGGUGGGCuuGCacCAuuUGGG- -5'
13103 5' -51.1 NC_003401.1 + 50105 0.68 0.973583
Target:  5'- ---aACCACCUGGauaGCGUGGcgauGACCUc -3'
miRNA:   3'- cucaUGGUGGGCU---UGCACCau--UUGGG- -5'
13103 5' -51.1 NC_003401.1 + 107631 0.67 0.978696
Target:  5'- cGGGUccGCCGCcaCCGGGCGcGGg--GCCCa -3'
miRNA:   3'- -CUCA--UGGUG--GGCUUGCaCCauuUGGG- -5'
13103 5' -51.1 NC_003401.1 + 30042 0.67 0.978696
Target:  5'- uGGGaUACCugCCGGucgccACGUcGGUAgugugaggcGACCCu -3'
miRNA:   3'- -CUC-AUGGugGGCU-----UGCA-CCAU---------UUGGG- -5'
13103 5' -51.1 NC_003401.1 + 84961 0.67 0.978696
Target:  5'- uGAGUGCaCAgCUGAAUGU-GUGGGCCa -3'
miRNA:   3'- -CUCAUG-GUgGGCUUGCAcCAUUUGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.