Results 1 - 20 of 31 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
13103 | 5' | -51.1 | NC_003401.1 | + | 1593 | 0.75 | 0.72484 |
Target: 5'- aGGUAUCuCCgGGAUGUGGUGGACaCCa -3' miRNA: 3'- cUCAUGGuGGgCUUGCACCAUUUG-GG- -5' |
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13103 | 5' | -51.1 | NC_003401.1 | + | 6061 | 0.65 | 0.992765 |
Target: 5'- -uGUGCCGCCUGGAUGgauuauguACCCc -3' miRNA: 3'- cuCAUGGUGGGCUUGCaccauu--UGGG- -5' |
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13103 | 5' | -51.1 | NC_003401.1 | + | 10824 | 0.69 | 0.939499 |
Target: 5'- cGGuUGCCGCCaCGGugGUGGUccguGGCuCCg -3' miRNA: 3'- cUC-AUGGUGG-GCUugCACCAu---UUG-GG- -5' |
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13103 | 5' | -51.1 | NC_003401.1 | + | 15007 | 1.14 | 0.004092 |
Target: 5'- cGAGUACCACCCGAACGUGGUAAACCCg -3' miRNA: 3'- -CUCAUGGUGGGCUUGCACCAUUUGGG- -5' |
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13103 | 5' | -51.1 | NC_003401.1 | + | 16339 | 0.66 | 0.988252 |
Target: 5'- gGAGgccgcugGCCACCCc-----GGUGAACCCg -3' miRNA: 3'- -CUCa------UGGUGGGcuugcaCCAUUUGGG- -5' |
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13103 | 5' | -51.1 | NC_003401.1 | + | 17716 | 0.68 | 0.970717 |
Target: 5'- -uGUGCCGCCCGcuCGc-GUuuACCCa -3' miRNA: 3'- cuCAUGGUGGGCuuGCacCAuuUGGG- -5' |
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13103 | 5' | -51.1 | NC_003401.1 | + | 21362 | 0.69 | 0.957022 |
Target: 5'- gGGGUggACCAgCUGcguuACGUGGUGGAUCUa -3' miRNA: 3'- -CUCA--UGGUgGGCu---UGCACCAUUUGGG- -5' |
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13103 | 5' | -51.1 | NC_003401.1 | + | 22576 | 0.66 | 0.988252 |
Target: 5'- ---cGCCACCCGGuuuaGUGGUcucuuacuCCCa -3' miRNA: 3'- cucaUGGUGGGCUug--CACCAuuu-----GGG- -5' |
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13103 | 5' | -51.1 | NC_003401.1 | + | 22676 | 0.67 | 0.98494 |
Target: 5'- cGGgcCCGCCuCGAcggaaaccagGCGUGGUuAGCCa -3' miRNA: 3'- cUCauGGUGG-GCU----------UGCACCAuUUGGg -5' |
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13103 | 5' | -51.1 | NC_003401.1 | + | 27954 | 0.67 | 0.98494 |
Target: 5'- -cGUACCAgCCGca-GUGGUAuuCCg -3' miRNA: 3'- cuCAUGGUgGGCuugCACCAUuuGGg -5' |
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13103 | 5' | -51.1 | NC_003401.1 | + | 30042 | 0.67 | 0.978696 |
Target: 5'- uGGGaUACCugCCGGucgccACGUcGGUAgugugaggcGACCCu -3' miRNA: 3'- -CUC-AUGGugGGCU-----UGCA-CCAU---------UUGGG- -5' |
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13103 | 5' | -51.1 | NC_003401.1 | + | 41367 | 0.66 | 0.992129 |
Target: 5'- ---gGCCACgaGGugGUGGggcgcAGGCCCg -3' miRNA: 3'- cucaUGGUGggCUugCACCa----UUUGGG- -5' |
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13103 | 5' | -51.1 | NC_003401.1 | + | 44177 | 0.7 | 0.917938 |
Target: 5'- uGGUGCCACCUGA----GGUAcaGGCCCu -3' miRNA: 3'- cUCAUGGUGGGCUugcaCCAU--UUGGG- -5' |
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13103 | 5' | -51.1 | NC_003401.1 | + | 50105 | 0.68 | 0.973583 |
Target: 5'- ---aACCACCUGGauaGCGUGGcgauGACCUc -3' miRNA: 3'- cucaUGGUGGGCU---UGCACCau--UUGGG- -5' |
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13103 | 5' | -51.1 | NC_003401.1 | + | 56627 | 0.74 | 0.755044 |
Target: 5'- uGAGUGCCAccuCCCGGGCGUucauGGUGccguGGCUCa -3' miRNA: 3'- -CUCAUGGU---GGGCUUGCA----CCAU----UUGGG- -5' |
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13103 | 5' | -51.1 | NC_003401.1 | + | 64379 | 0.74 | 0.735007 |
Target: 5'- cGGUACCGCCCGggUacGG-AGGCCCc -3' miRNA: 3'- cUCAUGGUGGGCuuGcaCCaUUUGGG- -5' |
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13103 | 5' | -51.1 | NC_003401.1 | + | 73910 | 0.68 | 0.964328 |
Target: 5'- uGGGU-CCAUuuGGucGCGUcgacGGUAAGCCCc -3' miRNA: 3'- -CUCAuGGUGggCU--UGCA----CCAUUUGGG- -5' |
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13103 | 5' | -51.1 | NC_003401.1 | + | 79899 | 0.71 | 0.90563 |
Target: 5'- aGGUACCGgCgGGACG-GGUAcgaaguAGCCCg -3' miRNA: 3'- cUCAUGGUgGgCUUGCaCCAU------UUGGG- -5' |
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13103 | 5' | -51.1 | NC_003401.1 | + | 84961 | 0.67 | 0.978696 |
Target: 5'- uGAGUGCaCAgCUGAAUGU-GUGGGCCa -3' miRNA: 3'- -CUCAUG-GUgGGCUUGCAcCAUUUGGg -5' |
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13103 | 5' | -51.1 | NC_003401.1 | + | 89243 | 0.66 | 0.988252 |
Target: 5'- aGAGgaucGCacaGCCCGuuguGCGUGGUu--CCCc -3' miRNA: 3'- -CUCa---UGg--UGGGCu---UGCACCAuuuGGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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