Results 1 - 20 of 31 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
13103 | 5' | -51.1 | NC_003401.1 | + | 133709 | 0.71 | 0.885297 |
Target: 5'- cGGGUGCCcggcggUCCGGGCGgGGgagAGGCCCg -3' miRNA: 3'- -CUCAUGGu-----GGGCUUGCaCCa--UUUGGG- -5' |
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13103 | 5' | -51.1 | NC_003401.1 | + | 128529 | 0.69 | 0.953012 |
Target: 5'- cGGGUACC-CCCGGGCaccuUGGcc-GCCCu -3' miRNA: 3'- -CUCAUGGuGGGCUUGc---ACCauuUGGG- -5' |
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13103 | 5' | -51.1 | NC_003401.1 | + | 126291 | 0.66 | 0.992129 |
Target: 5'- -uGUGUCGCCUGAACGUccGGUAggguggGACUCg -3' miRNA: 3'- cuCAUGGUGGGCUUGCA--CCAU------UUGGG- -5' |
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13103 | 5' | -51.1 | NC_003401.1 | + | 125857 | 0.68 | 0.970717 |
Target: 5'- aGAGUuCCugCgCGGGCGUGaagcUGGGCCCc -3' miRNA: 3'- -CUCAuGGugG-GCUUGCACc---AUUUGGG- -5' |
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13103 | 5' | -51.1 | NC_003401.1 | + | 123225 | 0.76 | 0.6624 |
Target: 5'- -cGUGCCGCCCGAGCuGUGcagcGAACCUg -3' miRNA: 3'- cuCAUGGUGGGCUUG-CACca--UUUGGG- -5' |
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13103 | 5' | -51.1 | NC_003401.1 | + | 113338 | 0.66 | 0.99097 |
Target: 5'- -uGUACUuuggcauaaaagGCCCGGGCGauuuaggugccUGGU-GACCCg -3' miRNA: 3'- cuCAUGG------------UGGGCUUGC-----------ACCAuUUGGG- -5' |
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13103 | 5' | -51.1 | NC_003401.1 | + | 112127 | 0.66 | 0.988252 |
Target: 5'- -cGUGCCuggaugCCGGucGCGUGGacugGGGCCCg -3' miRNA: 3'- cuCAUGGug----GGCU--UGCACCa---UUUGGG- -5' |
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13103 | 5' | -51.1 | NC_003401.1 | + | 108603 | 0.72 | 0.846705 |
Target: 5'- -cGUGCCAgcUCCGAGgGUGGUGGuguGCCUc -3' miRNA: 3'- cuCAUGGU--GGGCUUgCACCAUU---UGGG- -5' |
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13103 | 5' | -51.1 | NC_003401.1 | + | 107896 | 0.68 | 0.967634 |
Target: 5'- cGGGUccggcucgGCCGcCCCGAGCGUugccccGGUGGccuccACCCu -3' miRNA: 3'- -CUCA--------UGGU-GGGCUUGCA------CCAUU-----UGGG- -5' |
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13103 | 5' | -51.1 | NC_003401.1 | + | 107631 | 0.67 | 0.978696 |
Target: 5'- cGGGUccGCCGCcaCCGGGCGcGGg--GCCCa -3' miRNA: 3'- -CUCA--UGGUG--GGCUUGCaCCauuUGGG- -5' |
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13103 | 5' | -51.1 | NC_003401.1 | + | 107380 | 0.66 | 0.989681 |
Target: 5'- cGGU-CCACCUGGAguCGUccGGUucGGGCCCg -3' miRNA: 3'- cUCAuGGUGGGCUU--GCA--CCA--UUUGGG- -5' |
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13103 | 5' | -51.1 | NC_003401.1 | + | 89243 | 0.66 | 0.988252 |
Target: 5'- aGAGgaucGCacaGCCCGuuguGCGUGGUu--CCCc -3' miRNA: 3'- -CUCa---UGg--UGGGCu---UGCACCAuuuGGG- -5' |
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13103 | 5' | -51.1 | NC_003401.1 | + | 84961 | 0.67 | 0.978696 |
Target: 5'- uGAGUGCaCAgCUGAAUGU-GUGGGCCa -3' miRNA: 3'- -CUCAUG-GUgGGCUUGCAcCAUUUGGg -5' |
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13103 | 5' | -51.1 | NC_003401.1 | + | 79899 | 0.71 | 0.90563 |
Target: 5'- aGGUACCGgCgGGACG-GGUAcgaaguAGCCCg -3' miRNA: 3'- cUCAUGGUgGgCUUGCaCCAU------UUGGG- -5' |
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13103 | 5' | -51.1 | NC_003401.1 | + | 73910 | 0.68 | 0.964328 |
Target: 5'- uGGGU-CCAUuuGGucGCGUcgacGGUAAGCCCc -3' miRNA: 3'- -CUCAuGGUGggCU--UGCA----CCAUUUGGG- -5' |
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13103 | 5' | -51.1 | NC_003401.1 | + | 64379 | 0.74 | 0.735007 |
Target: 5'- cGGUACCGCCCGggUacGG-AGGCCCc -3' miRNA: 3'- cUCAUGGUGGGCuuGcaCCaUUUGGG- -5' |
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13103 | 5' | -51.1 | NC_003401.1 | + | 56627 | 0.74 | 0.755044 |
Target: 5'- uGAGUGCCAccuCCCGGGCGUucauGGUGccguGGCUCa -3' miRNA: 3'- -CUCAUGGU---GGGCUUGCA----CCAU----UUGGG- -5' |
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13103 | 5' | -51.1 | NC_003401.1 | + | 50105 | 0.68 | 0.973583 |
Target: 5'- ---aACCACCUGGauaGCGUGGcgauGACCUc -3' miRNA: 3'- cucaUGGUGGGCU---UGCACCau--UUGGG- -5' |
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13103 | 5' | -51.1 | NC_003401.1 | + | 44177 | 0.7 | 0.917938 |
Target: 5'- uGGUGCCACCUGA----GGUAcaGGCCCu -3' miRNA: 3'- cUCAUGGUGGGCUugcaCCAU--UUGGG- -5' |
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13103 | 5' | -51.1 | NC_003401.1 | + | 41367 | 0.66 | 0.992129 |
Target: 5'- ---gGCCACgaGGugGUGGggcgcAGGCCCg -3' miRNA: 3'- cucaUGGUGggCUugCACCa----UUUGGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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