Results 41 - 45 of 45 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
13105 | 3' | -56.7 | NC_003401.1 | + | 66176 | 0.67 | 0.81814 |
Target: 5'- -uGUGGCGAUGAcgAGGGuaUCCuGGa -3' miRNA: 3'- ccCACUGCUGCUuaUCCCcgAGG-CCa -5' |
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13105 | 3' | -56.7 | NC_003401.1 | + | 115763 | 0.67 | 0.81814 |
Target: 5'- nGGGUG-CucCGggUGGGGGCggcUCGGc -3' miRNA: 3'- -CCCACuGcuGCuuAUCCCCGa--GGCCa -5' |
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13105 | 3' | -56.7 | NC_003401.1 | + | 15370 | 0.67 | 0.850989 |
Target: 5'- -cGUGGCGGgGGAgGGGGGUUCaugaGGUc -3' miRNA: 3'- ccCACUGCUgCUUaUCCCCGAGg---CCA- -5' |
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13105 | 3' | -56.7 | NC_003401.1 | + | 132510 | 0.67 | 0.850989 |
Target: 5'- cGGG-GGCGGCGGccgcGGGC-CCGGg -3' miRNA: 3'- -CCCaCUGCUGCUuaucCCCGaGGCCa -5' |
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13105 | 3' | -56.7 | NC_003401.1 | + | 11783 | 0.66 | 0.887614 |
Target: 5'- aGGUGugGGCGucgacGGGC-CCGGc -3' miRNA: 3'- cCCACugCUGCuuaucCCCGaGGCCa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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