Results 21 - 40 of 45 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
13105 | 3' | -56.7 | NC_003401.1 | + | 115379 | 0.79 | 0.2348 |
Target: 5'- nGGGUGGCucCGggUGGGGGCggcucggcUCCGGg -3' miRNA: 3'- -CCCACUGcuGCuuAUCCCCG--------AGGCCa -5' |
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13105 | 3' | -56.7 | NC_003401.1 | + | 115411 | 0.79 | 0.2348 |
Target: 5'- nGGGUGGCucCGggUGGGGGCggcucggcUCCGGg -3' miRNA: 3'- -CCCACUGcuGCuuAUCCCCG--------AGGCCa -5' |
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13105 | 3' | -56.7 | NC_003401.1 | + | 115443 | 0.79 | 0.2348 |
Target: 5'- nGGGUGGCucCGggUGGGGGCggcucggcUCCGGg -3' miRNA: 3'- -CCCACUGcuGCuuAUCCCCG--------AGGCCa -5' |
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13105 | 3' | -56.7 | NC_003401.1 | + | 115475 | 0.79 | 0.2348 |
Target: 5'- nGGGUGGCucCGggUGGGGGCggcucggcUCCGGg -3' miRNA: 3'- -CCCACUGcuGCuuAUCCCCG--------AGGCCa -5' |
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13105 | 3' | -56.7 | NC_003401.1 | + | 115507 | 0.79 | 0.2348 |
Target: 5'- nGGGUGGCucCGggUGGGGGCggcucggcUCCGGg -3' miRNA: 3'- -CCCACUGcuGCuuAUCCCCG--------AGGCCa -5' |
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13105 | 3' | -56.7 | NC_003401.1 | + | 115539 | 0.79 | 0.2348 |
Target: 5'- nGGGUGGCucCGggUGGGGGCggcucggcUCCGGg -3' miRNA: 3'- -CCCACUGcuGCuuAUCCCCG--------AGGCCa -5' |
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13105 | 3' | -56.7 | NC_003401.1 | + | 115571 | 0.79 | 0.2348 |
Target: 5'- nGGGUGGCucCGggUGGGGGCggcucggcUCCGGg -3' miRNA: 3'- -CCCACUGcuGCuuAUCCCCG--------AGGCCa -5' |
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13105 | 3' | -56.7 | NC_003401.1 | + | 115603 | 0.79 | 0.2348 |
Target: 5'- nGGGUGGCucCGggUGGGGGCggcucggcUCCGGg -3' miRNA: 3'- -CCCACUGcuGCuuAUCCCCG--------AGGCCa -5' |
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13105 | 3' | -56.7 | NC_003401.1 | + | 115635 | 0.79 | 0.2348 |
Target: 5'- nGGGUGGCucCGggUGGGGGCggcucggcUCCGGg -3' miRNA: 3'- -CCCACUGcuGCuuAUCCCCG--------AGGCCa -5' |
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13105 | 3' | -56.7 | NC_003401.1 | + | 115667 | 0.79 | 0.2348 |
Target: 5'- nGGGUGGCucCGggUGGGGGCggcucggcUCCGGg -3' miRNA: 3'- -CCCACUGcuGCuuAUCCCCG--------AGGCCa -5' |
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13105 | 3' | -56.7 | NC_003401.1 | + | 115699 | 0.79 | 0.2348 |
Target: 5'- nGGGUGGCucCGggUGGGGGCggcucggcUCCGGg -3' miRNA: 3'- -CCCACUGcuGCuuAUCCCCG--------AGGCCa -5' |
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13105 | 3' | -56.7 | NC_003401.1 | + | 116274 | 0.76 | 0.33382 |
Target: 5'- nGGGUGGCucCGggUGGGGGCggccuaaaauccuuaCCGGUa -3' miRNA: 3'- -CCCACUGcuGCuuAUCCCCGa--------------GGCCA- -5' |
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13105 | 3' | -56.7 | NC_003401.1 | + | 28741 | 0.74 | 0.449221 |
Target: 5'- uGGGUGGaggGACGAG-AGGGagaGCUCCGGg -3' miRNA: 3'- -CCCACUg--CUGCUUaUCCC---CGAGGCCa -5' |
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13105 | 3' | -56.7 | NC_003401.1 | + | 71445 | 0.7 | 0.645314 |
Target: 5'- uGGGUGGCGugGAuugcacGGGGacggUCGGUg -3' miRNA: 3'- -CCCACUGCugCUuau---CCCCga--GGCCA- -5' |
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13105 | 3' | -56.7 | NC_003401.1 | + | 132770 | 0.7 | 0.655467 |
Target: 5'- gGGGcGGCGugGGggAGGGGaggCCGGc -3' miRNA: 3'- -CCCaCUGCugCUuaUCCCCga-GGCCa -5' |
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13105 | 3' | -56.7 | NC_003401.1 | + | 121675 | 0.7 | 0.664589 |
Target: 5'- uGGUGGgGGCGAAUgcgaugcGGGGGaugCCGGg -3' miRNA: 3'- cCCACUgCUGCUUA-------UCCCCga-GGCCa -5' |
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13105 | 3' | -56.7 | NC_003401.1 | + | 121156 | 0.68 | 0.754567 |
Target: 5'- cGGGcgcgGGgGGCGcg-GGGGGCgcgCCGGUu -3' miRNA: 3'- -CCCa---CUgCUGCuuaUCCCCGa--GGCCA- -5' |
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13105 | 3' | -56.7 | NC_003401.1 | + | 107519 | 0.68 | 0.773396 |
Target: 5'- --uUGACGugGGAUAGGGGUaUCCa-- -3' miRNA: 3'- cccACUGCugCUUAUCCCCG-AGGcca -5' |
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13105 | 3' | -56.7 | NC_003401.1 | + | 112114 | 0.68 | 0.782628 |
Target: 5'- cGGUcGCGugGAcu-GGGGCccgUCCGGUc -3' miRNA: 3'- cCCAcUGCugCUuauCCCCG---AGGCCA- -5' |
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13105 | 3' | -56.7 | NC_003401.1 | + | 115763 | 0.67 | 0.81814 |
Target: 5'- nGGGUG-CucCGggUGGGGGCggcUCGGc -3' miRNA: 3'- -CCCACuGcuGCuuAUCCCCGa--GGCCa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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