miRNA display CGI


Results 21 - 40 of 45 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13105 3' -56.7 NC_003401.1 + 116242 0.79 0.2348
Target:  5'- nGGGUGGCucCGggUGGGGGCggcucggcUCCGGg -3'
miRNA:   3'- -CCCACUGcuGCuuAUCCCCG--------AGGCCa -5'
13105 3' -56.7 NC_003401.1 + 116050 0.79 0.2348
Target:  5'- nGGGUGGCucCGggUGGGGGCggcucggcUCCGGg -3'
miRNA:   3'- -CCCACUGcuGCuuAUCCCCG--------AGGCCa -5'
13105 3' -56.7 NC_003401.1 + 116018 0.79 0.2348
Target:  5'- nGGGUGGCucCGggUGGGGGCggcucggcUCCGGg -3'
miRNA:   3'- -CCCACUGcuGCuuAUCCCCG--------AGGCCa -5'
13105 3' -56.7 NC_003401.1 + 115986 0.79 0.2348
Target:  5'- nGGGUGGCucCGggUGGGGGCggcucggcUCCGGg -3'
miRNA:   3'- -CCCACUGcuGCuuAUCCCCG--------AGGCCa -5'
13105 3' -56.7 NC_003401.1 + 115379 0.79 0.2348
Target:  5'- nGGGUGGCucCGggUGGGGGCggcucggcUCCGGg -3'
miRNA:   3'- -CCCACUGcuGCuuAUCCCCG--------AGGCCa -5'
13105 3' -56.7 NC_003401.1 + 115411 0.79 0.2348
Target:  5'- nGGGUGGCucCGggUGGGGGCggcucggcUCCGGg -3'
miRNA:   3'- -CCCACUGcuGCuuAUCCCCG--------AGGCCa -5'
13105 3' -56.7 NC_003401.1 + 115475 0.79 0.2348
Target:  5'- nGGGUGGCucCGggUGGGGGCggcucggcUCCGGg -3'
miRNA:   3'- -CCCACUGcuGCuuAUCCCCG--------AGGCCa -5'
13105 3' -56.7 NC_003401.1 + 115539 0.79 0.2348
Target:  5'- nGGGUGGCucCGggUGGGGGCggcucggcUCCGGg -3'
miRNA:   3'- -CCCACUGcuGCuuAUCCCCG--------AGGCCa -5'
13105 3' -56.7 NC_003401.1 + 115571 0.79 0.2348
Target:  5'- nGGGUGGCucCGggUGGGGGCggcucggcUCCGGg -3'
miRNA:   3'- -CCCACUGcuGCuuAUCCCCG--------AGGCCa -5'
13105 3' -56.7 NC_003401.1 + 115603 0.79 0.2348
Target:  5'- nGGGUGGCucCGggUGGGGGCggcucggcUCCGGg -3'
miRNA:   3'- -CCCACUGcuGCuuAUCCCCG--------AGGCCa -5'
13105 3' -56.7 NC_003401.1 + 115635 0.79 0.2348
Target:  5'- nGGGUGGCucCGggUGGGGGCggcucggcUCCGGg -3'
miRNA:   3'- -CCCACUGcuGCuuAUCCCCG--------AGGCCa -5'
13105 3' -56.7 NC_003401.1 + 115667 0.79 0.2348
Target:  5'- nGGGUGGCucCGggUGGGGGCggcucggcUCCGGg -3'
miRNA:   3'- -CCCACUGcuGCuuAUCCCCG--------AGGCCa -5'
13105 3' -56.7 NC_003401.1 + 115699 0.79 0.2348
Target:  5'- nGGGUGGCucCGggUGGGGGCggcucggcUCCGGg -3'
miRNA:   3'- -CCCACUGcuGCuuAUCCCCG--------AGGCCa -5'
13105 3' -56.7 NC_003401.1 + 115731 0.79 0.2348
Target:  5'- nGGGUGGCucCGggUGGGGGCggcucggcUCCGGg -3'
miRNA:   3'- -CCCACUGcuGCuuAUCCCCG--------AGGCCa -5'
13105 3' -56.7 NC_003401.1 + 115794 0.79 0.2348
Target:  5'- gGGGUGGCucCGggUGGGGGCggcucggcUCCGGg -3'
miRNA:   3'- -CCCACUGcuGCuuAUCCCCG--------AGGCCa -5'
13105 3' -56.7 NC_003401.1 + 115826 0.79 0.2348
Target:  5'- nGGGUGGCucCGggUGGGGGCggcucggcUCCGGg -3'
miRNA:   3'- -CCCACUGcuGCuuAUCCCCG--------AGGCCa -5'
13105 3' -56.7 NC_003401.1 + 115858 0.79 0.2348
Target:  5'- nGGGUGGCucCGggUGGGGGCggcucggcUCCGGg -3'
miRNA:   3'- -CCCACUGcuGCuuAUCCCCG--------AGGCCa -5'
13105 3' -56.7 NC_003401.1 + 115890 0.79 0.2348
Target:  5'- nGGGUGGCucCGggUGGGGGCggcucggcUCCGGg -3'
miRNA:   3'- -CCCACUGcuGCuuAUCCCCG--------AGGCCa -5'
13105 3' -56.7 NC_003401.1 + 115922 0.79 0.2348
Target:  5'- nGGGUGGCucCGggUGGGGGCggcucggcUCCGGg -3'
miRNA:   3'- -CCCACUGcuGCuuAUCCCCG--------AGGCCa -5'
13105 3' -56.7 NC_003401.1 + 115954 0.79 0.2348
Target:  5'- nGGGUGGCucCGggUGGGGGCggcucggcUCCGGg -3'
miRNA:   3'- -CCCACUGcuGCuuAUCCCCG--------AGGCCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.