Results 1 - 20 of 45 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
13105 | 3' | -56.7 | NC_003401.1 | + | 115954 | 0.79 | 0.2348 |
Target: 5'- nGGGUGGCucCGggUGGGGGCggcucggcUCCGGg -3' miRNA: 3'- -CCCACUGcuGCuuAUCCCCG--------AGGCCa -5' |
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13105 | 3' | -56.7 | NC_003401.1 | + | 115667 | 0.79 | 0.2348 |
Target: 5'- nGGGUGGCucCGggUGGGGGCggcucggcUCCGGg -3' miRNA: 3'- -CCCACUGcuGCuuAUCCCCG--------AGGCCa -5' |
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13105 | 3' | -56.7 | NC_003401.1 | + | 115699 | 0.79 | 0.2348 |
Target: 5'- nGGGUGGCucCGggUGGGGGCggcucggcUCCGGg -3' miRNA: 3'- -CCCACUGcuGCuuAUCCCCG--------AGGCCa -5' |
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13105 | 3' | -56.7 | NC_003401.1 | + | 115731 | 0.79 | 0.2348 |
Target: 5'- nGGGUGGCucCGggUGGGGGCggcucggcUCCGGg -3' miRNA: 3'- -CCCACUGcuGCuuAUCCCCG--------AGGCCa -5' |
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13105 | 3' | -56.7 | NC_003401.1 | + | 115794 | 0.79 | 0.2348 |
Target: 5'- gGGGUGGCucCGggUGGGGGCggcucggcUCCGGg -3' miRNA: 3'- -CCCACUGcuGCuuAUCCCCG--------AGGCCa -5' |
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13105 | 3' | -56.7 | NC_003401.1 | + | 115826 | 0.79 | 0.2348 |
Target: 5'- nGGGUGGCucCGggUGGGGGCggcucggcUCCGGg -3' miRNA: 3'- -CCCACUGcuGCuuAUCCCCG--------AGGCCa -5' |
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13105 | 3' | -56.7 | NC_003401.1 | + | 115858 | 0.79 | 0.2348 |
Target: 5'- nGGGUGGCucCGggUGGGGGCggcucggcUCCGGg -3' miRNA: 3'- -CCCACUGcuGCuuAUCCCCG--------AGGCCa -5' |
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13105 | 3' | -56.7 | NC_003401.1 | + | 115890 | 0.79 | 0.2348 |
Target: 5'- nGGGUGGCucCGggUGGGGGCggcucggcUCCGGg -3' miRNA: 3'- -CCCACUGcuGCuuAUCCCCG--------AGGCCa -5' |
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13105 | 3' | -56.7 | NC_003401.1 | + | 115922 | 0.79 | 0.2348 |
Target: 5'- nGGGUGGCucCGggUGGGGGCggcucggcUCCGGg -3' miRNA: 3'- -CCCACUGcuGCuuAUCCCCG--------AGGCCa -5' |
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13105 | 3' | -56.7 | NC_003401.1 | + | 115635 | 0.79 | 0.2348 |
Target: 5'- nGGGUGGCucCGggUGGGGGCggcucggcUCCGGg -3' miRNA: 3'- -CCCACUGcuGCuuAUCCCCG--------AGGCCa -5' |
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13105 | 3' | -56.7 | NC_003401.1 | + | 115603 | 0.79 | 0.2348 |
Target: 5'- nGGGUGGCucCGggUGGGGGCggcucggcUCCGGg -3' miRNA: 3'- -CCCACUGcuGCuuAUCCCCG--------AGGCCa -5' |
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13105 | 3' | -56.7 | NC_003401.1 | + | 115571 | 0.79 | 0.2348 |
Target: 5'- nGGGUGGCucCGggUGGGGGCggcucggcUCCGGg -3' miRNA: 3'- -CCCACUGcuGCuuAUCCCCG--------AGGCCa -5' |
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13105 | 3' | -56.7 | NC_003401.1 | + | 115315 | 0.79 | 0.2348 |
Target: 5'- nGGGUGGCucCGggUGGGGGCggcucggcUCCGGg -3' miRNA: 3'- -CCCACUGcuGCuuAUCCCCG--------AGGCCa -5' |
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13105 | 3' | -56.7 | NC_003401.1 | + | 115347 | 0.79 | 0.2348 |
Target: 5'- nGGGUGGCucCGggUGGGGGCggcucggcUCCGGg -3' miRNA: 3'- -CCCACUGcuGCuuAUCCCCG--------AGGCCa -5' |
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13105 | 3' | -56.7 | NC_003401.1 | + | 115379 | 0.79 | 0.2348 |
Target: 5'- nGGGUGGCucCGggUGGGGGCggcucggcUCCGGg -3' miRNA: 3'- -CCCACUGcuGCuuAUCCCCG--------AGGCCa -5' |
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13105 | 3' | -56.7 | NC_003401.1 | + | 115411 | 0.79 | 0.2348 |
Target: 5'- nGGGUGGCucCGggUGGGGGCggcucggcUCCGGg -3' miRNA: 3'- -CCCACUGcuGCuuAUCCCCG--------AGGCCa -5' |
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13105 | 3' | -56.7 | NC_003401.1 | + | 115443 | 0.79 | 0.2348 |
Target: 5'- nGGGUGGCucCGggUGGGGGCggcucggcUCCGGg -3' miRNA: 3'- -CCCACUGcuGCuuAUCCCCG--------AGGCCa -5' |
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13105 | 3' | -56.7 | NC_003401.1 | + | 115475 | 0.79 | 0.2348 |
Target: 5'- nGGGUGGCucCGggUGGGGGCggcucggcUCCGGg -3' miRNA: 3'- -CCCACUGcuGCuuAUCCCCG--------AGGCCa -5' |
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13105 | 3' | -56.7 | NC_003401.1 | + | 115507 | 0.79 | 0.2348 |
Target: 5'- nGGGUGGCucCGggUGGGGGCggcucggcUCCGGg -3' miRNA: 3'- -CCCACUGcuGCuuAUCCCCG--------AGGCCa -5' |
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13105 | 3' | -56.7 | NC_003401.1 | + | 115539 | 0.79 | 0.2348 |
Target: 5'- nGGGUGGCucCGggUGGGGGCggcucggcUCCGGg -3' miRNA: 3'- -CCCACUGcuGCuuAUCCCCG--------AGGCCa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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