miRNA display CGI


Results 1 - 20 of 45 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13105 3' -56.7 NC_003401.1 + 11783 0.66 0.887614
Target:  5'- aGGUGugGGCGucgacGGGC-CCGGc -3'
miRNA:   3'- cCCACugCUGCuuaucCCCGaGGCCa -5'
13105 3' -56.7 NC_003401.1 + 14348 0.67 0.81814
Target:  5'- uGGUGGCGGCuGAAc---GGCUCCGGc -3'
miRNA:   3'- cCCACUGCUG-CUUauccCCGAGGCCa -5'
13105 3' -56.7 NC_003401.1 + 15370 0.67 0.850989
Target:  5'- -cGUGGCGGgGGAgGGGGGUUCaugaGGUc -3'
miRNA:   3'- ccCACUGCUgCUUaUCCCCGAGg---CCA- -5'
13105 3' -56.7 NC_003401.1 + 18343 1.1 0.002243
Target:  5'- gGGGUGACGACGAAUAGGGGCUCCGGUg -3'
miRNA:   3'- -CCCACUGCUGCUUAUCCCCGAGGCCA- -5'
13105 3' -56.7 NC_003401.1 + 28741 0.74 0.449221
Target:  5'- uGGGUGGaggGACGAG-AGGGagaGCUCCGGg -3'
miRNA:   3'- -CCCACUg--CUGCUUaUCCC---CGAGGCCa -5'
13105 3' -56.7 NC_003401.1 + 66176 0.67 0.81814
Target:  5'- -uGUGGCGAUGAcgAGGGuaUCCuGGa -3'
miRNA:   3'- ccCACUGCUGCUuaUCCCcgAGG-CCa -5'
13105 3' -56.7 NC_003401.1 + 71445 0.7 0.645314
Target:  5'- uGGGUGGCGugGAuugcacGGGGacggUCGGUg -3'
miRNA:   3'- -CCCACUGCugCUuau---CCCCga--GGCCA- -5'
13105 3' -56.7 NC_003401.1 + 107519 0.68 0.773396
Target:  5'- --uUGACGugGGAUAGGGGUaUCCa-- -3'
miRNA:   3'- cccACUGCugCUUAUCCCCG-AGGcca -5'
13105 3' -56.7 NC_003401.1 + 112114 0.68 0.782628
Target:  5'- cGGUcGCGugGAcu-GGGGCccgUCCGGUc -3'
miRNA:   3'- cCCAcUGCugCUuauCCCCG---AGGCCA- -5'
13105 3' -56.7 NC_003401.1 + 115283 0.79 0.2348
Target:  5'- gGGGUGGCucCGggUGGGGGCggcucggcUCCGGg -3'
miRNA:   3'- -CCCACUGcuGCuuAUCCCCG--------AGGCCa -5'
13105 3' -56.7 NC_003401.1 + 115315 0.79 0.2348
Target:  5'- nGGGUGGCucCGggUGGGGGCggcucggcUCCGGg -3'
miRNA:   3'- -CCCACUGcuGCuuAUCCCCG--------AGGCCa -5'
13105 3' -56.7 NC_003401.1 + 115347 0.79 0.2348
Target:  5'- nGGGUGGCucCGggUGGGGGCggcucggcUCCGGg -3'
miRNA:   3'- -CCCACUGcuGCuuAUCCCCG--------AGGCCa -5'
13105 3' -56.7 NC_003401.1 + 115379 0.79 0.2348
Target:  5'- nGGGUGGCucCGggUGGGGGCggcucggcUCCGGg -3'
miRNA:   3'- -CCCACUGcuGCuuAUCCCCG--------AGGCCa -5'
13105 3' -56.7 NC_003401.1 + 115411 0.79 0.2348
Target:  5'- nGGGUGGCucCGggUGGGGGCggcucggcUCCGGg -3'
miRNA:   3'- -CCCACUGcuGCuuAUCCCCG--------AGGCCa -5'
13105 3' -56.7 NC_003401.1 + 115443 0.79 0.2348
Target:  5'- nGGGUGGCucCGggUGGGGGCggcucggcUCCGGg -3'
miRNA:   3'- -CCCACUGcuGCuuAUCCCCG--------AGGCCa -5'
13105 3' -56.7 NC_003401.1 + 115475 0.79 0.2348
Target:  5'- nGGGUGGCucCGggUGGGGGCggcucggcUCCGGg -3'
miRNA:   3'- -CCCACUGcuGCuuAUCCCCG--------AGGCCa -5'
13105 3' -56.7 NC_003401.1 + 115507 0.79 0.2348
Target:  5'- nGGGUGGCucCGggUGGGGGCggcucggcUCCGGg -3'
miRNA:   3'- -CCCACUGcuGCuuAUCCCCG--------AGGCCa -5'
13105 3' -56.7 NC_003401.1 + 115539 0.79 0.2348
Target:  5'- nGGGUGGCucCGggUGGGGGCggcucggcUCCGGg -3'
miRNA:   3'- -CCCACUGcuGCuuAUCCCCG--------AGGCCa -5'
13105 3' -56.7 NC_003401.1 + 115571 0.79 0.2348
Target:  5'- nGGGUGGCucCGggUGGGGGCggcucggcUCCGGg -3'
miRNA:   3'- -CCCACUGcuGCuuAUCCCCG--------AGGCCa -5'
13105 3' -56.7 NC_003401.1 + 115603 0.79 0.2348
Target:  5'- nGGGUGGCucCGggUGGGGGCggcucggcUCCGGg -3'
miRNA:   3'- -CCCACUGcuGCuuAUCCCCG--------AGGCCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.