Results 1 - 20 of 45 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
13105 | 3' | -56.7 | NC_003401.1 | + | 132770 | 0.7 | 0.655467 |
Target: 5'- gGGGcGGCGugGGggAGGGGaggCCGGc -3' miRNA: 3'- -CCCaCUGCugCUuaUCCCCga-GGCCa -5' |
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13105 | 3' | -56.7 | NC_003401.1 | + | 132510 | 0.67 | 0.850989 |
Target: 5'- cGGG-GGCGGCGGccgcGGGC-CCGGg -3' miRNA: 3'- -CCCaCUGCUGCUuaucCCCGaGGCCa -5' |
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13105 | 3' | -56.7 | NC_003401.1 | + | 121675 | 0.7 | 0.664589 |
Target: 5'- uGGUGGgGGCGAAUgcgaugcGGGGGaugCCGGg -3' miRNA: 3'- cCCACUgCUGCUUA-------UCCCCga-GGCCa -5' |
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13105 | 3' | -56.7 | NC_003401.1 | + | 121156 | 0.68 | 0.754567 |
Target: 5'- cGGGcgcgGGgGGCGcg-GGGGGCgcgCCGGUu -3' miRNA: 3'- -CCCa---CUgCUGCuuaUCCCCGa--GGCCA- -5' |
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13105 | 3' | -56.7 | NC_003401.1 | + | 116274 | 0.76 | 0.33382 |
Target: 5'- nGGGUGGCucCGggUGGGGGCggccuaaaauccuuaCCGGUa -3' miRNA: 3'- -CCCACUGcuGCuuAUCCCCGa--------------GGCCA- -5' |
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13105 | 3' | -56.7 | NC_003401.1 | + | 116242 | 0.79 | 0.2348 |
Target: 5'- nGGGUGGCucCGggUGGGGGCggcucggcUCCGGg -3' miRNA: 3'- -CCCACUGcuGCuuAUCCCCG--------AGGCCa -5' |
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13105 | 3' | -56.7 | NC_003401.1 | + | 116210 | 0.79 | 0.2348 |
Target: 5'- nGGGUGGCucCGggUGGGGGCggcucggcUCCGGg -3' miRNA: 3'- -CCCACUGcuGCuuAUCCCCG--------AGGCCa -5' |
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13105 | 3' | -56.7 | NC_003401.1 | + | 116178 | 0.79 | 0.2348 |
Target: 5'- nGGGUGGCucCGggUGGGGGCggcucggcUCCGGg -3' miRNA: 3'- -CCCACUGcuGCuuAUCCCCG--------AGGCCa -5' |
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13105 | 3' | -56.7 | NC_003401.1 | + | 116146 | 0.79 | 0.2348 |
Target: 5'- nGGGUGGCucCGggUGGGGGCggcucggcUCCGGg -3' miRNA: 3'- -CCCACUGcuGCuuAUCCCCG--------AGGCCa -5' |
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13105 | 3' | -56.7 | NC_003401.1 | + | 116114 | 0.79 | 0.2348 |
Target: 5'- nGGGUGGCucCGggUGGGGGCggcucggcUCCGGg -3' miRNA: 3'- -CCCACUGcuGCuuAUCCCCG--------AGGCCa -5' |
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13105 | 3' | -56.7 | NC_003401.1 | + | 116082 | 0.79 | 0.2348 |
Target: 5'- nGGGUGGCucCGggUGGGGGCggcucggcUCCGGg -3' miRNA: 3'- -CCCACUGcuGCuuAUCCCCG--------AGGCCa -5' |
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13105 | 3' | -56.7 | NC_003401.1 | + | 116050 | 0.79 | 0.2348 |
Target: 5'- nGGGUGGCucCGggUGGGGGCggcucggcUCCGGg -3' miRNA: 3'- -CCCACUGcuGCuuAUCCCCG--------AGGCCa -5' |
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13105 | 3' | -56.7 | NC_003401.1 | + | 116018 | 0.79 | 0.2348 |
Target: 5'- nGGGUGGCucCGggUGGGGGCggcucggcUCCGGg -3' miRNA: 3'- -CCCACUGcuGCuuAUCCCCG--------AGGCCa -5' |
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13105 | 3' | -56.7 | NC_003401.1 | + | 115986 | 0.79 | 0.2348 |
Target: 5'- nGGGUGGCucCGggUGGGGGCggcucggcUCCGGg -3' miRNA: 3'- -CCCACUGcuGCuuAUCCCCG--------AGGCCa -5' |
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13105 | 3' | -56.7 | NC_003401.1 | + | 115954 | 0.79 | 0.2348 |
Target: 5'- nGGGUGGCucCGggUGGGGGCggcucggcUCCGGg -3' miRNA: 3'- -CCCACUGcuGCuuAUCCCCG--------AGGCCa -5' |
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13105 | 3' | -56.7 | NC_003401.1 | + | 115922 | 0.79 | 0.2348 |
Target: 5'- nGGGUGGCucCGggUGGGGGCggcucggcUCCGGg -3' miRNA: 3'- -CCCACUGcuGCuuAUCCCCG--------AGGCCa -5' |
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13105 | 3' | -56.7 | NC_003401.1 | + | 115890 | 0.79 | 0.2348 |
Target: 5'- nGGGUGGCucCGggUGGGGGCggcucggcUCCGGg -3' miRNA: 3'- -CCCACUGcuGCuuAUCCCCG--------AGGCCa -5' |
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13105 | 3' | -56.7 | NC_003401.1 | + | 115858 | 0.79 | 0.2348 |
Target: 5'- nGGGUGGCucCGggUGGGGGCggcucggcUCCGGg -3' miRNA: 3'- -CCCACUGcuGCuuAUCCCCG--------AGGCCa -5' |
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13105 | 3' | -56.7 | NC_003401.1 | + | 115826 | 0.79 | 0.2348 |
Target: 5'- nGGGUGGCucCGggUGGGGGCggcucggcUCCGGg -3' miRNA: 3'- -CCCACUGcuGCuuAUCCCCG--------AGGCCa -5' |
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13105 | 3' | -56.7 | NC_003401.1 | + | 115794 | 0.79 | 0.2348 |
Target: 5'- gGGGUGGCucCGggUGGGGGCggcucggcUCCGGg -3' miRNA: 3'- -CCCACUGcuGCuuAUCCCCG--------AGGCCa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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