Results 1 - 20 of 32 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
13107 | 3' | -61.7 | NC_003401.1 | + | 122572 | 0.66 | 0.66111 |
Target: 5'- gCCGCGCGCUg---CGCGGCGGa--- -3' miRNA: 3'- aGGCGCGCGAgcugGUGCCGCCcaug -5' |
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13107 | 3' | -61.7 | NC_003401.1 | + | 15032 | 0.66 | 0.66111 |
Target: 5'- uUCCGUGCGCcacgcgCGACgGCGaCGcGGUGa -3' miRNA: 3'- -AGGCGCGCGa-----GCUGgUGCcGC-CCAUg -5' |
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13107 | 3' | -61.7 | NC_003401.1 | + | 18821 | 0.66 | 0.66111 |
Target: 5'- --aGCGCGCg-GAUCGCGaGCuGGUGCu -3' miRNA: 3'- aggCGCGCGagCUGGUGC-CGcCCAUG- -5' |
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13107 | 3' | -61.7 | NC_003401.1 | + | 118183 | 0.66 | 0.658154 |
Target: 5'- cCCGCGgGCgacccCGGCgGCGGCaccgcgggcgcuggGGGUGa -3' miRNA: 3'- aGGCGCgCGa----GCUGgUGCCG--------------CCCAUg -5' |
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13107 | 3' | -61.7 | NC_003401.1 | + | 122773 | 0.66 | 0.641374 |
Target: 5'- cUgGCGaCGCUUG-CCACGGUucGGUGCg -3' miRNA: 3'- aGgCGC-GCGAGCuGGUGCCGc-CCAUG- -5' |
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13107 | 3' | -61.7 | NC_003401.1 | + | 12859 | 0.66 | 0.635445 |
Target: 5'- cUCCGCGCgagcaucaacaagguGCUgGAggagcucuCCAgGGCGuGGUGCc -3' miRNA: 3'- -AGGCGCG---------------CGAgCU--------GGUgCCGC-CCAUG- -5' |
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13107 | 3' | -61.7 | NC_003401.1 | + | 132388 | 0.66 | 0.631492 |
Target: 5'- gCCGCGCGC-CgGGCCGCuuucgguucGCGGGgcCg -3' miRNA: 3'- aGGCGCGCGaG-CUGGUGc--------CGCCCauG- -5' |
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13107 | 3' | -61.7 | NC_003401.1 | + | 118027 | 0.66 | 0.611736 |
Target: 5'- gCCGCGCGUacccaUCGGCCGCucuuuGGCgccgGGGUc- -3' miRNA: 3'- aGGCGCGCG-----AGCUGGUG-----CCG----CCCAug -5' |
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13107 | 3' | -61.7 | NC_003401.1 | + | 27751 | 0.66 | 0.611736 |
Target: 5'- cCUGCGCGCUCuGgUACGGCuguGGG-GCg -3' miRNA: 3'- aGGCGCGCGAGcUgGUGCCG---CCCaUG- -5' |
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13107 | 3' | -61.7 | NC_003401.1 | + | 52457 | 0.66 | 0.611736 |
Target: 5'- aCCGcCGUGCUCGGaCGCGGCucGUAUg -3' miRNA: 3'- aGGC-GCGCGAGCUgGUGCCGccCAUG- -5' |
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13107 | 3' | -61.7 | NC_003401.1 | + | 44076 | 0.67 | 0.601876 |
Target: 5'- cCUGUGCGuUUUGuCCGCGuuaauuccgcGCGGGUGCg -3' miRNA: 3'- aGGCGCGC-GAGCuGGUGC----------CGCCCAUG- -5' |
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13107 | 3' | -61.7 | NC_003401.1 | + | 117846 | 0.67 | 0.600891 |
Target: 5'- aCCGC-CGgaCGACCccggcgccaaagaGCGGCcgauGGGUACg -3' miRNA: 3'- aGGCGcGCgaGCUGG-------------UGCCG----CCCAUG- -5' |
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13107 | 3' | -61.7 | NC_003401.1 | + | 85692 | 0.67 | 0.592037 |
Target: 5'- uUCUGCGCGC-CaGACuUAUGGCGuGUGCu -3' miRNA: 3'- -AGGCGCGCGaG-CUG-GUGCCGCcCAUG- -5' |
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13107 | 3' | -61.7 | NC_003401.1 | + | 14331 | 0.67 | 0.592037 |
Target: 5'- cUCCG-GCGC-CGGCaGgGGCGGGaGCa -3' miRNA: 3'- -AGGCgCGCGaGCUGgUgCCGCCCaUG- -5' |
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13107 | 3' | -61.7 | NC_003401.1 | + | 58997 | 0.67 | 0.582226 |
Target: 5'- aUCCugucCGCGCUUGACCG-GGCcaGGUACc -3' miRNA: 3'- -AGGc---GCGCGAGCUGGUgCCGc-CCAUG- -5' |
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13107 | 3' | -61.7 | NC_003401.1 | + | 132403 | 0.67 | 0.572447 |
Target: 5'- cCCGgGCGCaagauggCGGCCGCGGCccGGcgGCg -3' miRNA: 3'- aGGCgCGCGa------GCUGGUGCCGc-CCa-UG- -5' |
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13107 | 3' | -61.7 | NC_003401.1 | + | 105991 | 0.67 | 0.572447 |
Target: 5'- gCCGCGCGCcUGGCCAaGGCGcuuGG-GCg -3' miRNA: 3'- aGGCGCGCGaGCUGGUgCCGC---CCaUG- -5' |
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13107 | 3' | -61.7 | NC_003401.1 | + | 48372 | 0.67 | 0.572447 |
Target: 5'- cCUGgGCGUUCGAgCgCACGGUGGuGUGu -3' miRNA: 3'- aGGCgCGCGAGCU-G-GUGCCGCC-CAUg -5' |
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13107 | 3' | -61.7 | NC_003401.1 | + | 132443 | 0.67 | 0.562709 |
Target: 5'- cCCgGCGCGCg-GGCC-CGGgGGGcGCg -3' miRNA: 3'- aGG-CGCGCGagCUGGuGCCgCCCaUG- -5' |
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13107 | 3' | -61.7 | NC_003401.1 | + | 23260 | 0.68 | 0.543372 |
Target: 5'- uUCCGUGUGUUUcgcgGGCCGgGGUcGGUACg -3' miRNA: 3'- -AGGCGCGCGAG----CUGGUgCCGcCCAUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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