miRNA display CGI


Results 1 - 20 of 32 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13107 3' -61.7 NC_003401.1 + 15032 0.66 0.66111
Target:  5'- uUCCGUGCGCcacgcgCGACgGCGaCGcGGUGa -3'
miRNA:   3'- -AGGCGCGCGa-----GCUGgUGCcGC-CCAUg -5'
13107 3' -61.7 NC_003401.1 + 122572 0.66 0.66111
Target:  5'- gCCGCGCGCUg---CGCGGCGGa--- -3'
miRNA:   3'- aGGCGCGCGAgcugGUGCCGCCcaug -5'
13107 3' -61.7 NC_003401.1 + 18821 0.66 0.66111
Target:  5'- --aGCGCGCg-GAUCGCGaGCuGGUGCu -3'
miRNA:   3'- aggCGCGCGagCUGGUGC-CGcCCAUG- -5'
13107 3' -61.7 NC_003401.1 + 118183 0.66 0.658154
Target:  5'- cCCGCGgGCgacccCGGCgGCGGCaccgcgggcgcuggGGGUGa -3'
miRNA:   3'- aGGCGCgCGa----GCUGgUGCCG--------------CCCAUg -5'
13107 3' -61.7 NC_003401.1 + 122773 0.66 0.641374
Target:  5'- cUgGCGaCGCUUG-CCACGGUucGGUGCg -3'
miRNA:   3'- aGgCGC-GCGAGCuGGUGCCGc-CCAUG- -5'
13107 3' -61.7 NC_003401.1 + 12859 0.66 0.635445
Target:  5'- cUCCGCGCgagcaucaacaagguGCUgGAggagcucuCCAgGGCGuGGUGCc -3'
miRNA:   3'- -AGGCGCG---------------CGAgCU--------GGUgCCGC-CCAUG- -5'
13107 3' -61.7 NC_003401.1 + 132388 0.66 0.631492
Target:  5'- gCCGCGCGC-CgGGCCGCuuucgguucGCGGGgcCg -3'
miRNA:   3'- aGGCGCGCGaG-CUGGUGc--------CGCCCauG- -5'
13107 3' -61.7 NC_003401.1 + 27751 0.66 0.611736
Target:  5'- cCUGCGCGCUCuGgUACGGCuguGGG-GCg -3'
miRNA:   3'- aGGCGCGCGAGcUgGUGCCG---CCCaUG- -5'
13107 3' -61.7 NC_003401.1 + 52457 0.66 0.611736
Target:  5'- aCCGcCGUGCUCGGaCGCGGCucGUAUg -3'
miRNA:   3'- aGGC-GCGCGAGCUgGUGCCGccCAUG- -5'
13107 3' -61.7 NC_003401.1 + 118027 0.66 0.611736
Target:  5'- gCCGCGCGUacccaUCGGCCGCucuuuGGCgccgGGGUc- -3'
miRNA:   3'- aGGCGCGCG-----AGCUGGUG-----CCG----CCCAug -5'
13107 3' -61.7 NC_003401.1 + 44076 0.67 0.601876
Target:  5'- cCUGUGCGuUUUGuCCGCGuuaauuccgcGCGGGUGCg -3'
miRNA:   3'- aGGCGCGC-GAGCuGGUGC----------CGCCCAUG- -5'
13107 3' -61.7 NC_003401.1 + 117846 0.67 0.600891
Target:  5'- aCCGC-CGgaCGACCccggcgccaaagaGCGGCcgauGGGUACg -3'
miRNA:   3'- aGGCGcGCgaGCUGG-------------UGCCG----CCCAUG- -5'
13107 3' -61.7 NC_003401.1 + 14331 0.67 0.592037
Target:  5'- cUCCG-GCGC-CGGCaGgGGCGGGaGCa -3'
miRNA:   3'- -AGGCgCGCGaGCUGgUgCCGCCCaUG- -5'
13107 3' -61.7 NC_003401.1 + 85692 0.67 0.592037
Target:  5'- uUCUGCGCGC-CaGACuUAUGGCGuGUGCu -3'
miRNA:   3'- -AGGCGCGCGaG-CUG-GUGCCGCcCAUG- -5'
13107 3' -61.7 NC_003401.1 + 58997 0.67 0.582226
Target:  5'- aUCCugucCGCGCUUGACCG-GGCcaGGUACc -3'
miRNA:   3'- -AGGc---GCGCGAGCUGGUgCCGc-CCAUG- -5'
13107 3' -61.7 NC_003401.1 + 132403 0.67 0.572447
Target:  5'- cCCGgGCGCaagauggCGGCCGCGGCccGGcgGCg -3'
miRNA:   3'- aGGCgCGCGa------GCUGGUGCCGc-CCa-UG- -5'
13107 3' -61.7 NC_003401.1 + 105991 0.67 0.572447
Target:  5'- gCCGCGCGCcUGGCCAaGGCGcuuGG-GCg -3'
miRNA:   3'- aGGCGCGCGaGCUGGUgCCGC---CCaUG- -5'
13107 3' -61.7 NC_003401.1 + 48372 0.67 0.572447
Target:  5'- cCUGgGCGUUCGAgCgCACGGUGGuGUGu -3'
miRNA:   3'- aGGCgCGCGAGCU-G-GUGCCGCC-CAUg -5'
13107 3' -61.7 NC_003401.1 + 132443 0.67 0.562709
Target:  5'- cCCgGCGCGCg-GGCC-CGGgGGGcGCg -3'
miRNA:   3'- aGG-CGCGCGagCUGGuGCCgCCCaUG- -5'
13107 3' -61.7 NC_003401.1 + 23260 0.68 0.543372
Target:  5'- uUCCGUGUGUUUcgcgGGCCGgGGUcGGUACg -3'
miRNA:   3'- -AGGCGCGCGAG----CUGGUgCCGcCCAUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.