miRNA display CGI


Results 1 - 20 of 33 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13109 3' -61.7 NC_003401.1 + 11751 0.7 0.363539
Target:  5'- uCGCGGugGUGGUCGcGCCcuuGGGGGUg- -3'
miRNA:   3'- -GCGUCugCGCCGGCaCGG---UUCCCGag -5'
13109 3' -61.7 NC_003401.1 + 14625 0.68 0.464398
Target:  5'- aGCAGGCccucaagaacacaGcCGGCCGUGCCGcguGcGGCUUc -3'
miRNA:   3'- gCGUCUG-------------C-GCCGGCACGGUu--C-CCGAG- -5'
13109 3' -61.7 NC_003401.1 + 14793 0.66 0.579991
Target:  5'- aCGCGGcACGgcCGGCUGUGUUcuuGAGGGCc- -3'
miRNA:   3'- -GCGUC-UGC--GCCGGCACGG---UUCCCGag -5'
13109 3' -61.7 NC_003401.1 + 17497 0.77 0.131007
Target:  5'- aCGCGGACGCGGCgCGcgugGCCcccGGGUUCg -3'
miRNA:   3'- -GCGUCUGCGCCG-GCa---CGGuu-CCCGAG- -5'
13109 3' -61.7 NC_003401.1 + 18450 0.7 0.363539
Target:  5'- gGCAgGGCGCGGCgGcgGCCAcaAGGGUg- -3'
miRNA:   3'- gCGU-CUGCGCCGgCa-CGGU--UCCCGag -5'
13109 3' -61.7 NC_003401.1 + 18824 0.71 0.318763
Target:  5'- gCGCGGAuCGCGaGCUgGUGCUgcGGGUUCa -3'
miRNA:   3'- -GCGUCU-GCGC-CGG-CACGGuuCCCGAG- -5'
13109 3' -61.7 NC_003401.1 + 18973 0.7 0.387506
Target:  5'- uGaCAGACGCGuGCa--GCCAggAGGGCUCc -3'
miRNA:   3'- gC-GUCUGCGC-CGgcaCGGU--UCCCGAG- -5'
13109 3' -61.7 NC_003401.1 + 20272 0.71 0.348141
Target:  5'- cCGgGGACGCGgacGCCGcgGCCAuuGGCUCc -3'
miRNA:   3'- -GCgUCUGCGC---CGGCa-CGGUucCCGAG- -5'
13109 3' -61.7 NC_003401.1 + 22292 0.69 0.429688
Target:  5'- aCGUAGACGCaGCUGgGCgAAuGGCUCg -3'
miRNA:   3'- -GCGUCUGCGcCGGCaCGgUUcCCGAG- -5'
13109 3' -61.7 NC_003401.1 + 22344 1.1 0.000612
Target:  5'- aCGCAGACGCGGCCGUGCCAAGGGCUCa -3'
miRNA:   3'- -GCGUCUGCGCCGGCACGGUUCCCGAG- -5'
13109 3' -61.7 NC_003401.1 + 24751 0.68 0.493002
Target:  5'- cCGCAG-CGCgGGgCGUGUUAAgcGGGCUUg -3'
miRNA:   3'- -GCGUCuGCG-CCgGCACGGUU--CCCGAG- -5'
13109 3' -61.7 NC_003401.1 + 32425 0.67 0.521429
Target:  5'- --gAGACGCGGCa--GCUuaccGGGGCUCa -3'
miRNA:   3'- gcgUCUGCGCCGgcaCGGu---UCCCGAG- -5'
13109 3' -61.7 NC_003401.1 + 42295 0.67 0.550472
Target:  5'- aGCGGguggaGCGUGGCCGccaCCAGGGGaUCg -3'
miRNA:   3'- gCGUC-----UGCGCCGGCac-GGUUCCCgAG- -5'
13109 3' -61.7 NC_003401.1 + 49871 0.66 0.619818
Target:  5'- uGuCGGGCGUcacGGCCGaaggGaCCGAGGGCa- -3'
miRNA:   3'- gC-GUCUGCG---CCGGCa---C-GGUUCCCGag -5'
13109 3' -61.7 NC_003401.1 + 50027 0.66 0.599859
Target:  5'- aGCGaACuCGGCCGccGUCcGGGGCUCg -3'
miRNA:   3'- gCGUcUGcGCCGGCa-CGGuUCCCGAG- -5'
13109 3' -61.7 NC_003401.1 + 72160 0.68 0.502402
Target:  5'- gGUAGACGCGcaCCGUGagaCGAGGGUc- -3'
miRNA:   3'- gCGUCUGCGCc-GGCACg--GUUCCCGag -5'
13109 3' -61.7 NC_003401.1 + 89799 0.67 0.521429
Target:  5'- uGCGG-CGCGGuCCGUauauGCCA-GGGC-Cg -3'
miRNA:   3'- gCGUCuGCGCC-GGCA----CGGUuCCCGaG- -5'
13109 3' -61.7 NC_003401.1 + 105000 0.66 0.603845
Target:  5'- aCGCcucuaGGACGUuugaguacgugaucuGGCgGUGCagAGGGGCUCc -3'
miRNA:   3'- -GCG-----UCUGCG---------------CCGgCACGg-UUCCCGAG- -5'
13109 3' -61.7 NC_003401.1 + 105490 0.69 0.421035
Target:  5'- gGCcagGGugGCGGCCGUcaCCuGGGcGCUCa -3'
miRNA:   3'- gCG---UCugCGCCGGCAc-GGuUCC-CGAG- -5'
13109 3' -61.7 NC_003401.1 + 109918 0.66 0.609831
Target:  5'- -aUAGACGCaGCCGUGCUGcAGGcGCa- -3'
miRNA:   3'- gcGUCUGCGcCGGCACGGU-UCC-CGag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.