Results 21 - 33 of 33 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
13109 | 3' | -61.7 | NC_003401.1 | + | 118439 | 0.69 | 0.447301 |
Target: 5'- gGCAGAgGcCGGCCG-GCCAaAGGuGCg- -3' miRNA: 3'- gCGUCUgC-GCCGGCaCGGU-UCC-CGag -5' |
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13109 | 3' | -61.7 | NC_003401.1 | + | 119705 | 0.71 | 0.340619 |
Target: 5'- gGCAGACGacagagaGGCCGUGCUGu-GGCUUu -3' miRNA: 3'- gCGUCUGCg------CCGGCACGGUucCCGAG- -5' |
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13109 | 3' | -61.7 | NC_003401.1 | + | 120406 | 0.7 | 0.379402 |
Target: 5'- aCGUGGAUGCGGuCUGuUGCC-AGGGCcCa -3' miRNA: 3'- -GCGUCUGCGCC-GGC-ACGGuUCCCGaG- -5' |
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13109 | 3' | -61.7 | NC_003401.1 | + | 121947 | 0.72 | 0.304788 |
Target: 5'- gGCuGGCGCGGCCGUGCCAc--GCc- -3' miRNA: 3'- gCGuCUGCGCCGGCACGGUuccCGag -5' |
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13109 | 3' | -61.7 | NC_003401.1 | + | 122426 | 0.69 | 0.456256 |
Target: 5'- gCGCAGcGCGCGGCCGcUGCCGAaaccaacgccGCUUg -3' miRNA: 3'- -GCGUC-UGCGCCGGC-ACGGUUcc--------CGAG- -5' |
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13109 | 3' | -61.7 | NC_003401.1 | + | 124501 | 0.69 | 0.438444 |
Target: 5'- gGguGACGCagGGCCGU-CCuauAGaGGCUCg -3' miRNA: 3'- gCguCUGCG--CCGGCAcGGu--UC-CCGAG- -5' |
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13109 | 3' | -61.7 | NC_003401.1 | + | 126954 | 0.66 | 0.609831 |
Target: 5'- gGUAaucuGACaGCGGCCG-GCCcAGGGgUCc -3' miRNA: 3'- gCGU----CUG-CGCCGGCaCGGuUCCCgAG- -5' |
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13109 | 3' | -61.7 | NC_003401.1 | + | 132238 | 0.66 | 0.579991 |
Target: 5'- cCGcCGGGcCGCGGCCGccaucuugcGCCcGGGGCg- -3' miRNA: 3'- -GC-GUCU-GCGCCGGCa--------CGGuUCCCGag -5' |
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13109 | 3' | -61.7 | NC_003401.1 | + | 132398 | 0.66 | 0.589911 |
Target: 5'- gCGCaAGAUgGCGGCCGcgGCCcGGcGGCg- -3' miRNA: 3'- -GCG-UCUG-CGCCGGCa-CGGuUC-CCGag -5' |
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13109 | 3' | -61.7 | NC_003401.1 | + | 132498 | 0.68 | 0.493002 |
Target: 5'- cCGCGGGCcCgGGCCGgcgggGCgGAGGGC-Cg -3' miRNA: 3'- -GCGUCUGcG-CCGGCa----CGgUUCCCGaG- -5' |
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13109 | 3' | -61.7 | NC_003401.1 | + | 132538 | 0.73 | 0.253603 |
Target: 5'- aGCGGcccggcGCGCGGCgCGgggcgGCCGGGGGCg- -3' miRNA: 3'- gCGUC------UGCGCCG-GCa----CGGUUCCCGag -5' |
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13109 | 3' | -61.7 | NC_003401.1 | + | 132556 | 0.68 | 0.465307 |
Target: 5'- cCGCGGcGCGCGGCuccCGaUGCCGGGcGGC-Cg -3' miRNA: 3'- -GCGUC-UGCGCCG---GC-ACGGUUC-CCGaG- -5' |
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13109 | 3' | -61.7 | NC_003401.1 | + | 132648 | 0.68 | 0.502402 |
Target: 5'- cCGcCGGGCuCGGCCG-GaCCGGGGcGCUCc -3' miRNA: 3'- -GC-GUCUGcGCCGGCaC-GGUUCC-CGAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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