miRNA display CGI


Results 21 - 33 of 33 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13109 3' -61.7 NC_003401.1 + 14793 0.66 0.579991
Target:  5'- aCGCGGcACGgcCGGCUGUGUUcuuGAGGGCc- -3'
miRNA:   3'- -GCGUC-UGC--GCCGGCACGG---UUCCCGag -5'
13109 3' -61.7 NC_003401.1 + 132398 0.66 0.589911
Target:  5'- gCGCaAGAUgGCGGCCGcgGCCcGGcGGCg- -3'
miRNA:   3'- -GCG-UCUG-CGCCGGCa-CGGuUC-CCGag -5'
13109 3' -61.7 NC_003401.1 + 132498 0.68 0.493002
Target:  5'- cCGCGGGCcCgGGCCGgcgggGCgGAGGGC-Cg -3'
miRNA:   3'- -GCGUCUGcG-CCGGCa----CGgUUCCCGaG- -5'
13109 3' -61.7 NC_003401.1 + 124501 0.69 0.438444
Target:  5'- gGguGACGCagGGCCGU-CCuauAGaGGCUCg -3'
miRNA:   3'- gCguCUGCG--CCGGCAcGGu--UC-CCGAG- -5'
13109 3' -61.7 NC_003401.1 + 22292 0.69 0.429688
Target:  5'- aCGUAGACGCaGCUGgGCgAAuGGCUCg -3'
miRNA:   3'- -GCGUCUGCGcCGGCaCGgUUcCCGAG- -5'
13109 3' -61.7 NC_003401.1 + 120406 0.7 0.379402
Target:  5'- aCGUGGAUGCGGuCUGuUGCC-AGGGCcCa -3'
miRNA:   3'- -GCGUCUGCGCC-GGC-ACGGuUCCCGaG- -5'
13109 3' -61.7 NC_003401.1 + 11751 0.7 0.363539
Target:  5'- uCGCGGugGUGGUCGcGCCcuuGGGGGUg- -3'
miRNA:   3'- -GCGUCugCGCCGGCaCGG---UUCCCGag -5'
13109 3' -61.7 NC_003401.1 + 18450 0.7 0.363539
Target:  5'- gGCAgGGCGCGGCgGcgGCCAcaAGGGUg- -3'
miRNA:   3'- gCGU-CUGCGCCGgCa-CGGU--UCCCGag -5'
13109 3' -61.7 NC_003401.1 + 20272 0.71 0.348141
Target:  5'- cCGgGGACGCGgacGCCGcgGCCAuuGGCUCc -3'
miRNA:   3'- -GCgUCUGCGC---CGGCa-CGGUucCCGAG- -5'
13109 3' -61.7 NC_003401.1 + 119705 0.71 0.340619
Target:  5'- gGCAGACGacagagaGGCCGUGCUGu-GGCUUu -3'
miRNA:   3'- gCGUCUGCg------CCGGCACGGUucCCGAG- -5'
13109 3' -61.7 NC_003401.1 + 132538 0.73 0.253603
Target:  5'- aGCGGcccggcGCGCGGCgCGgggcgGCCGGGGGCg- -3'
miRNA:   3'- gCGUC------UGCGCCG-GCa----CGGUUCCCGag -5'
13109 3' -61.7 NC_003401.1 + 22344 1.1 0.000612
Target:  5'- aCGCAGACGCGGCCGUGCCAAGGGCUCa -3'
miRNA:   3'- -GCGUCUGCGCCGGCACGGUUCCCGAG- -5'
13109 3' -61.7 NC_003401.1 + 105000 0.66 0.603845
Target:  5'- aCGCcucuaGGACGUuugaguacgugaucuGGCgGUGCagAGGGGCUCc -3'
miRNA:   3'- -GCG-----UCUGCG---------------CCGgCACGg-UUCCCGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.