Results 1 - 20 of 33 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
13109 | 3' | -61.7 | NC_003401.1 | + | 120406 | 0.7 | 0.379402 |
Target: 5'- aCGUGGAUGCGGuCUGuUGCC-AGGGCcCa -3' miRNA: 3'- -GCGUCUGCGCC-GGC-ACGGuUCCCGaG- -5' |
|||||||
13109 | 3' | -61.7 | NC_003401.1 | + | 18450 | 0.7 | 0.363539 |
Target: 5'- gGCAgGGCGCGGCgGcgGCCAcaAGGGUg- -3' miRNA: 3'- gCGU-CUGCGCCGgCa-CGGU--UCCCGag -5' |
|||||||
13109 | 3' | -61.7 | NC_003401.1 | + | 20272 | 0.71 | 0.348141 |
Target: 5'- cCGgGGACGCGgacGCCGcgGCCAuuGGCUCc -3' miRNA: 3'- -GCgUCUGCGC---CGGCa-CGGUucCCGAG- -5' |
|||||||
13109 | 3' | -61.7 | NC_003401.1 | + | 119705 | 0.71 | 0.340619 |
Target: 5'- gGCAGACGacagagaGGCCGUGCUGu-GGCUUu -3' miRNA: 3'- gCGUCUGCg------CCGGCACGGUucCCGAG- -5' |
|||||||
13109 | 3' | -61.7 | NC_003401.1 | + | 132538 | 0.73 | 0.253603 |
Target: 5'- aGCGGcccggcGCGCGGCgCGgggcgGCCGGGGGCg- -3' miRNA: 3'- gCGUC------UGCGCCG-GCa----CGGUUCCCGag -5' |
|||||||
13109 | 3' | -61.7 | NC_003401.1 | + | 22344 | 1.1 | 0.000612 |
Target: 5'- aCGCAGACGCGGCCGUGCCAAGGGCUCa -3' miRNA: 3'- -GCGUCUGCGCCGGCACGGUUCCCGAG- -5' |
|||||||
13109 | 3' | -61.7 | NC_003401.1 | + | 105000 | 0.66 | 0.603845 |
Target: 5'- aCGCcucuaGGACGUuugaguacgugaucuGGCgGUGCagAGGGGCUCc -3' miRNA: 3'- -GCG-----UCUGCG---------------CCGgCACGg-UUCCCGAG- -5' |
|||||||
13109 | 3' | -61.7 | NC_003401.1 | + | 132398 | 0.66 | 0.589911 |
Target: 5'- gCGCaAGAUgGCGGCCGcgGCCcGGcGGCg- -3' miRNA: 3'- -GCG-UCUG-CGCCGGCa-CGGuUC-CCGag -5' |
|||||||
13109 | 3' | -61.7 | NC_003401.1 | + | 89799 | 0.67 | 0.521429 |
Target: 5'- uGCGG-CGCGGuCCGUauauGCCA-GGGC-Cg -3' miRNA: 3'- gCGUCuGCGCC-GGCA----CGGUuCCCGaG- -5' |
|||||||
13109 | 3' | -61.7 | NC_003401.1 | + | 132648 | 0.68 | 0.502402 |
Target: 5'- cCGcCGGGCuCGGCCG-GaCCGGGGcGCUCc -3' miRNA: 3'- -GC-GUCUGcGCCGGCaC-GGUUCC-CGAG- -5' |
|||||||
13109 | 3' | -61.7 | NC_003401.1 | + | 24751 | 0.68 | 0.493002 |
Target: 5'- cCGCAG-CGCgGGgCGUGUUAAgcGGGCUUg -3' miRNA: 3'- -GCGUCuGCG-CCgGCACGGUU--CCCGAG- -5' |
|||||||
13109 | 3' | -61.7 | NC_003401.1 | + | 22292 | 0.69 | 0.429688 |
Target: 5'- aCGUAGACGCaGCUGgGCgAAuGGCUCg -3' miRNA: 3'- -GCGUCUGCGcCGGCaCGgUUcCCGAG- -5' |
|||||||
13109 | 3' | -61.7 | NC_003401.1 | + | 42295 | 0.67 | 0.550472 |
Target: 5'- aGCGGguggaGCGUGGCCGccaCCAGGGGaUCg -3' miRNA: 3'- gCGUC-----UGCGCCGGCac-GGUUCCCgAG- -5' |
|||||||
13109 | 3' | -61.7 | NC_003401.1 | + | 124501 | 0.69 | 0.438444 |
Target: 5'- gGguGACGCagGGCCGU-CCuauAGaGGCUCg -3' miRNA: 3'- gCguCUGCG--CCGGCAcGGu--UC-CCGAG- -5' |
|||||||
13109 | 3' | -61.7 | NC_003401.1 | + | 72160 | 0.68 | 0.502402 |
Target: 5'- gGUAGACGCGcaCCGUGagaCGAGGGUc- -3' miRNA: 3'- gCGUCUGCGCc-GGCACg--GUUCCCGag -5' |
|||||||
13109 | 3' | -61.7 | NC_003401.1 | + | 14793 | 0.66 | 0.579991 |
Target: 5'- aCGCGGcACGgcCGGCUGUGUUcuuGAGGGCc- -3' miRNA: 3'- -GCGUC-UGC--GCCGGCACGG---UUCCCGag -5' |
|||||||
13109 | 3' | -61.7 | NC_003401.1 | + | 132498 | 0.68 | 0.493002 |
Target: 5'- cCGCGGGCcCgGGCCGgcgggGCgGAGGGC-Cg -3' miRNA: 3'- -GCGUCUGcG-CCGGCa----CGgUUCCCGaG- -5' |
|||||||
13109 | 3' | -61.7 | NC_003401.1 | + | 11751 | 0.7 | 0.363539 |
Target: 5'- uCGCGGugGUGGUCGcGCCcuuGGGGGUg- -3' miRNA: 3'- -GCGUCugCGCCGGCaCGG---UUCCCGag -5' |
|||||||
13109 | 3' | -61.7 | NC_003401.1 | + | 49871 | 0.66 | 0.619818 |
Target: 5'- uGuCGGGCGUcacGGCCGaaggGaCCGAGGGCa- -3' miRNA: 3'- gC-GUCUGCG---CCGGCa---C-GGUUCCCGag -5' |
|||||||
13109 | 3' | -61.7 | NC_003401.1 | + | 109918 | 0.66 | 0.609831 |
Target: 5'- -aUAGACGCaGCCGUGCUGcAGGcGCa- -3' miRNA: 3'- gcGUCUGCGcCGGCACGGU-UCC-CGag -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home