miRNA display CGI


Results 21 - 40 of 40 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13110 5' -62.5 NC_003401.1 + 118532 0.7 0.350293
Target:  5'- cGUCAGCGUCGCCGCaGGCCgagCCg--- -3'
miRNA:   3'- -CGGUCGCGGUGGUGgCCGGa--GGagac -5'
13110 5' -62.5 NC_003401.1 + 118607 0.67 0.541879
Target:  5'- cCCcGCGaucgCACCuuugGCCGGCCggCCUCUGc -3'
miRNA:   3'- cGGuCGCg---GUGG----UGGCCGGa-GGAGAC- -5'
13110 5' -62.5 NC_003401.1 + 118727 0.71 0.30025
Target:  5'- gGCC-GCGCCGCUuggcgGCgCGGCUUCCUCc- -3'
miRNA:   3'- -CGGuCGCGGUGG-----UG-GCCGGAGGAGac -5'
13110 5' -62.5 NC_003401.1 + 118850 0.67 0.541879
Target:  5'- cCCcGUGCgCAUCGCCGcCCUCCUCg- -3'
miRNA:   3'- cGGuCGCG-GUGGUGGCcGGAGGAGac -5'
13110 5' -62.5 NC_003401.1 + 118883 0.7 0.373484
Target:  5'- aGCC-GCGCCGCCAagcggcgCGGCCggUUCUGg -3'
miRNA:   3'- -CGGuCGCGGUGGUg------GCCGGagGAGAC- -5'
13110 5' -62.5 NC_003401.1 + 119527 0.69 0.414387
Target:  5'- cGCCGGCcggucaaaaaGCCACaGCaCGGCCU-CUCUGu -3'
miRNA:   3'- -CGGUCG----------CGGUGgUG-GCCGGAgGAGAC- -5'
13110 5' -62.5 NC_003401.1 + 119951 0.67 0.513218
Target:  5'- uGCCGcuGCGCCGCCuCCGGCCa------ -3'
miRNA:   3'- -CGGU--CGCGGUGGuGGCCGGaggagac -5'
13110 5' -62.5 NC_003401.1 + 120368 0.67 0.503801
Target:  5'- uGCUAGCGUUuucCCACUGGCCguuaguaUUCUGg -3'
miRNA:   3'- -CGGUCGCGGu--GGUGGCCGGag-----GAGAC- -5'
13110 5' -62.5 NC_003401.1 + 121947 0.67 0.500991
Target:  5'- gGCUGGCGCgGCCgugccacgcccccuGCCGcGCCUCCcggcCUGu -3'
miRNA:   3'- -CGGUCGCGgUGG--------------UGGC-CGGAGGa---GAC- -5'
13110 5' -62.5 NC_003401.1 + 125219 0.72 0.255914
Target:  5'- aCgGGCGCCACC--UGGCCUCC-CUGg -3'
miRNA:   3'- cGgUCGCGGUGGugGCCGGAGGaGAC- -5'
13110 5' -62.5 NC_003401.1 + 125740 0.71 0.320994
Target:  5'- aCCaaGGCGCCACUGCUGGCggCCUCg- -3'
miRNA:   3'- cGG--UCGCGGUGGUGGCCGgaGGAGac -5'
13110 5' -62.5 NC_003401.1 + 126176 0.7 0.338349
Target:  5'- gGCCAGgGCCaucucgauagcgguaACCACCauGCCUCCgucgCUGa -3'
miRNA:   3'- -CGGUCgCGG---------------UGGUGGc-CGGAGGa---GAC- -5'
13110 5' -62.5 NC_003401.1 + 128043 0.67 0.503801
Target:  5'- uGCCAGCaGCUggcGCgCACCGGCacgccugUCCUCg- -3'
miRNA:   3'- -CGGUCG-CGG---UG-GUGGCCGg------AGGAGac -5'
13110 5' -62.5 NC_003401.1 + 132227 0.8 0.0758
Target:  5'- gGCCGGCGCCGCCGCCGgGCCgcggCCg--- -3'
miRNA:   3'- -CGGUCGCGGUGGUGGC-CGGa---GGagac -5'
13110 5' -62.5 NC_003401.1 + 132296 0.76 0.158313
Target:  5'- gGCCcgcGCGCCgggcGCCGCCGGCCUCCc--- -3'
miRNA:   3'- -CGGu--CGCGG----UGGUGGCCGGAGGagac -5'
13110 5' -62.5 NC_003401.1 + 132347 0.67 0.510385
Target:  5'- cGCCGGCccgggcccgcggccGCCGCCcCCGGCCgCCcCg- -3'
miRNA:   3'- -CGGUCG--------------CGGUGGuGGCCGGaGGaGac -5'
13110 5' -62.5 NC_003401.1 + 132378 0.71 0.30025
Target:  5'- cCCGGCGgCGgCGCCGGCCgggcgCCUCc- -3'
miRNA:   3'- cGGUCGCgGUgGUGGCCGGa----GGAGac -5'
13110 5' -62.5 NC_003401.1 + 132584 0.69 0.390327
Target:  5'- gGCCGcCGCCcggcauggcgguccuCCGCCGGCCUCCcCUc -3'
miRNA:   3'- -CGGUcGCGGu--------------GGUGGCCGGAGGaGAc -5'
13110 5' -62.5 NC_003401.1 + 132657 0.67 0.513218
Target:  5'- gGCgCGGCGCCGCCGggcUCGGCCggaCCg--- -3'
miRNA:   3'- -CG-GUCGCGGUGGU---GGCCGGa--GGagac -5'
13110 5' -62.5 NC_003401.1 + 132825 0.69 0.414387
Target:  5'- cGCCgaGGCGCCccggGCC-CCGGCCccCCUCc- -3'
miRNA:   3'- -CGG--UCGCGG----UGGuGGCCGGa-GGAGac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.