Results 1 - 20 of 40 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
13110 | 5' | -62.5 | NC_003401.1 | + | 8753 | 0.67 | 0.513218 |
Target: 5'- aGCCGGuCGCCGCCACagGGCg-CCUg-- -3' miRNA: 3'- -CGGUC-GCGGUGGUGg-CCGgaGGAgac -5' |
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13110 | 5' | -62.5 | NC_003401.1 | + | 9368 | 0.69 | 0.422892 |
Target: 5'- cGCCGGCGCC-CUACUGGCCg------ -3' miRNA: 3'- -CGGUCGCGGuGGUGGCCGGaggagac -5' |
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13110 | 5' | -62.5 | NC_003401.1 | + | 11694 | 0.73 | 0.238618 |
Target: 5'- -gCAGCGCCucgGCCACCGGCgaaCUCUUCa- -3' miRNA: 3'- cgGUCGCGG---UGGUGGCCG---GAGGAGac -5' |
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13110 | 5' | -62.5 | NC_003401.1 | + | 12340 | 0.67 | 0.532262 |
Target: 5'- cGCCAGC-CCACCACCgaaacgcgGGUCUUCg--- -3' miRNA: 3'- -CGGUCGcGGUGGUGG--------CCGGAGGagac -5' |
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13110 | 5' | -62.5 | NC_003401.1 | + | 16185 | 0.75 | 0.166316 |
Target: 5'- aCCGGgGUgGCCAgCGGCCUCCUCc- -3' miRNA: 3'- cGGUCgCGgUGGUgGCCGGAGGAGac -5' |
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13110 | 5' | -62.5 | NC_003401.1 | + | 17643 | 0.67 | 0.513218 |
Target: 5'- cGCCGcguccGCGUCGCCGCCGGaaUCCa--- -3' miRNA: 3'- -CGGU-----CGCGGUGGUGGCCggAGGagac -5' |
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13110 | 5' | -62.5 | NC_003401.1 | + | 23692 | 1.09 | 0.000648 |
Target: 5'- cGCCAGCGCCACCACCGGCCUCCUCUGc -3' miRNA: 3'- -CGGUCGCGGUGGUGGCCGGAGGAGAC- -5' |
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13110 | 5' | -62.5 | NC_003401.1 | + | 23804 | 0.76 | 0.136355 |
Target: 5'- aGCgCGGCGCCACCuGCCGGCCg-CUCg- -3' miRNA: 3'- -CG-GUCGCGGUGG-UGGCCGGagGAGac -5' |
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13110 | 5' | -62.5 | NC_003401.1 | + | 27687 | 0.68 | 0.485198 |
Target: 5'- gGCCAGCG-CACaGCCGGCCcCCg--- -3' miRNA: 3'- -CGGUCGCgGUGgUGGCCGGaGGagac -5' |
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13110 | 5' | -62.5 | NC_003401.1 | + | 27853 | 0.7 | 0.342793 |
Target: 5'- aGCCGGCgaGCCACCacGCCGGUCUCg---- -3' miRNA: 3'- -CGGUCG--CGGUGG--UGGCCGGAGgagac -5' |
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13110 | 5' | -62.5 | NC_003401.1 | + | 27972 | 0.66 | 0.548645 |
Target: 5'- -aCAGCGCCAUgacguccuuguguaUGCCGaCCUCCUCg- -3' miRNA: 3'- cgGUCGCGGUG--------------GUGGCcGGAGGAGac -5' |
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13110 | 5' | -62.5 | NC_003401.1 | + | 30507 | 0.69 | 0.389514 |
Target: 5'- aCCGGCGCCucaACCuGGCCUCgCUcCUGg -3' miRNA: 3'- cGGUCGCGGuggUGG-CCGGAG-GA-GAC- -5' |
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13110 | 5' | -62.5 | NC_003401.1 | + | 41181 | 0.67 | 0.531303 |
Target: 5'- aGCCAcgGCCGCCGCUcugucaaacugcaGGCCUCUgCUGu -3' miRNA: 3'- -CGGUcgCGGUGGUGG-------------CCGGAGGaGAC- -5' |
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13110 | 5' | -62.5 | NC_003401.1 | + | 48842 | 0.69 | 0.405987 |
Target: 5'- -aCAGCGCCGCCuuuACCcaaGCgCUCCUCUc -3' miRNA: 3'- cgGUCGCGGUGG---UGGc--CG-GAGGAGAc -5' |
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13110 | 5' | -62.5 | NC_003401.1 | + | 73203 | 0.72 | 0.268007 |
Target: 5'- uGCCGGUGUgCGCCACCGucaccaCCUCCUCg- -3' miRNA: 3'- -CGGUCGCG-GUGGUGGCc-----GGAGGAGac -5' |
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13110 | 5' | -62.5 | NC_003401.1 | + | 78083 | 0.71 | 0.293569 |
Target: 5'- uGCCGGCGCCGCCACCGcuGCaaCC-Cg- -3' miRNA: 3'- -CGGUCGCGGUGGUGGC--CGgaGGaGac -5' |
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13110 | 5' | -62.5 | NC_003401.1 | + | 82768 | 0.74 | 0.207458 |
Target: 5'- aCCGGCGCCaACCGgaccaaacuuauucaCGGCCUCCUCg- -3' miRNA: 3'- cGGUCGCGG-UGGUg--------------GCCGGAGGAGac -5' |
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13110 | 5' | -62.5 | NC_003401.1 | + | 89844 | 0.69 | 0.414387 |
Target: 5'- aGCCAGgGaCGCC-CCuGCCUCCUCc- -3' miRNA: 3'- -CGGUCgCgGUGGuGGcCGGAGGAGac -5' |
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13110 | 5' | -62.5 | NC_003401.1 | + | 96039 | 0.66 | 0.580864 |
Target: 5'- gGCCAaC-UCACUaACCGGUCUCCUUUGg -3' miRNA: 3'- -CGGUcGcGGUGG-UGGCCGGAGGAGAC- -5' |
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13110 | 5' | -62.5 | NC_003401.1 | + | 118102 | 0.73 | 0.233074 |
Target: 5'- gGCCGcGCGCCACCAUgGGCC-CCagaUUUGg -3' miRNA: 3'- -CGGU-CGCGGUGGUGgCCGGaGG---AGAC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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