Results 1 - 20 of 40 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
13110 | 5' | -62.5 | NC_003401.1 | + | 23692 | 1.09 | 0.000648 |
Target: 5'- cGCCAGCGCCACCACCGGCCUCCUCUGc -3' miRNA: 3'- -CGGUCGCGGUGGUGGCCGGAGGAGAC- -5' |
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13110 | 5' | -62.5 | NC_003401.1 | + | 132227 | 0.8 | 0.0758 |
Target: 5'- gGCCGGCGCCGCCGCCGgGCCgcggCCg--- -3' miRNA: 3'- -CGGUCGCGGUGGUGGC-CGGa---GGagac -5' |
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13110 | 5' | -62.5 | NC_003401.1 | + | 23804 | 0.76 | 0.136355 |
Target: 5'- aGCgCGGCGCCACCuGCCGGCCg-CUCg- -3' miRNA: 3'- -CG-GUCGCGGUGG-UGGCCGGagGAGac -5' |
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13110 | 5' | -62.5 | NC_003401.1 | + | 132296 | 0.76 | 0.158313 |
Target: 5'- gGCCcgcGCGCCgggcGCCGCCGGCCUCCc--- -3' miRNA: 3'- -CGGu--CGCGG----UGGUGGCCGGAGGagac -5' |
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13110 | 5' | -62.5 | NC_003401.1 | + | 16185 | 0.75 | 0.166316 |
Target: 5'- aCCGGgGUgGCCAgCGGCCUCCUCc- -3' miRNA: 3'- cGGUCgCGgUGGUgGCCGGAGGAGac -5' |
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13110 | 5' | -62.5 | NC_003401.1 | + | 82768 | 0.74 | 0.207458 |
Target: 5'- aCCGGCGCCaACCGgaccaaacuuauucaCGGCCUCCUCg- -3' miRNA: 3'- cGGUCGCGG-UGGUg--------------GCCGGAGGAGac -5' |
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13110 | 5' | -62.5 | NC_003401.1 | + | 118102 | 0.73 | 0.233074 |
Target: 5'- gGCCGcGCGCCACCAUgGGCC-CCagaUUUGg -3' miRNA: 3'- -CGGU-CGCGGUGGUGgCCGGaGG---AGAC- -5' |
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13110 | 5' | -62.5 | NC_003401.1 | + | 11694 | 0.73 | 0.238618 |
Target: 5'- -gCAGCGCCucgGCCACCGGCgaaCUCUUCa- -3' miRNA: 3'- cgGUCGCGG---UGGUGGCCG---GAGGAGac -5' |
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13110 | 5' | -62.5 | NC_003401.1 | + | 125219 | 0.72 | 0.255914 |
Target: 5'- aCgGGCGCCACC--UGGCCUCC-CUGg -3' miRNA: 3'- cGgUCGCGGUGGugGCCGGAGGaGAC- -5' |
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13110 | 5' | -62.5 | NC_003401.1 | + | 73203 | 0.72 | 0.268007 |
Target: 5'- uGCCGGUGUgCGCCACCGucaccaCCUCCUCg- -3' miRNA: 3'- -CGGUCGCG-GUGGUGGCc-----GGAGGAGac -5' |
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13110 | 5' | -62.5 | NC_003401.1 | + | 78083 | 0.71 | 0.293569 |
Target: 5'- uGCCGGCGCCGCCACCGcuGCaaCC-Cg- -3' miRNA: 3'- -CGGUCGCGGUGGUGGC--CGgaGGaGac -5' |
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13110 | 5' | -62.5 | NC_003401.1 | + | 118727 | 0.71 | 0.30025 |
Target: 5'- gGCC-GCGCCGCUuggcgGCgCGGCUUCCUCc- -3' miRNA: 3'- -CGGuCGCGGUGG-----UG-GCCGGAGGAGac -5' |
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13110 | 5' | -62.5 | NC_003401.1 | + | 132378 | 0.71 | 0.30025 |
Target: 5'- cCCGGCGgCGgCGCCGGCCgggcgCCUCc- -3' miRNA: 3'- cGGUCGCgGUgGUGGCCGGa----GGAGac -5' |
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13110 | 5' | -62.5 | NC_003401.1 | + | 125740 | 0.71 | 0.320994 |
Target: 5'- aCCaaGGCGCCACUGCUGGCggCCUCg- -3' miRNA: 3'- cGG--UCGCGGUGGUGGCCGgaGGAGac -5' |
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13110 | 5' | -62.5 | NC_003401.1 | + | 126176 | 0.7 | 0.338349 |
Target: 5'- gGCCAGgGCCaucucgauagcgguaACCACCauGCCUCCgucgCUGa -3' miRNA: 3'- -CGGUCgCGG---------------UGGUGGc-CGGAGGa---GAC- -5' |
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13110 | 5' | -62.5 | NC_003401.1 | + | 27853 | 0.7 | 0.342793 |
Target: 5'- aGCCGGCgaGCCACCacGCCGGUCUCg---- -3' miRNA: 3'- -CGGUCG--CGGUGG--UGGCCGGAGgagac -5' |
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13110 | 5' | -62.5 | NC_003401.1 | + | 118532 | 0.7 | 0.350293 |
Target: 5'- cGUCAGCGUCGCCGCaGGCCgagCCg--- -3' miRNA: 3'- -CGGUCGCGGUGGUGgCCGGa--GGagac -5' |
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13110 | 5' | -62.5 | NC_003401.1 | + | 118883 | 0.7 | 0.373484 |
Target: 5'- aGCC-GCGCCGCCAagcggcgCGGCCggUUCUGg -3' miRNA: 3'- -CGGuCGCGGUGGUg------GCCGGagGAGAC- -5' |
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13110 | 5' | -62.5 | NC_003401.1 | + | 30507 | 0.69 | 0.389514 |
Target: 5'- aCCGGCGCCucaACCuGGCCUCgCUcCUGg -3' miRNA: 3'- cGGUCGCGGuggUGG-CCGGAG-GA-GAC- -5' |
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13110 | 5' | -62.5 | NC_003401.1 | + | 132584 | 0.69 | 0.390327 |
Target: 5'- gGCCGcCGCCcggcauggcgguccuCCGCCGGCCUCCcCUc -3' miRNA: 3'- -CGGUcGCGGu--------------GGUGGCCGGAGGaGAc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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