miRNA display CGI


Results 1 - 20 of 40 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13110 5' -62.5 NC_003401.1 + 132227 0.8 0.0758
Target:  5'- gGCCGGCGCCGCCGCCGgGCCgcggCCg--- -3'
miRNA:   3'- -CGGUCGCGGUGGUGGC-CGGa---GGagac -5'
13110 5' -62.5 NC_003401.1 + 27972 0.66 0.548645
Target:  5'- -aCAGCGCCAUgacguccuuguguaUGCCGaCCUCCUCg- -3'
miRNA:   3'- cgGUCGCGGUG--------------GUGGCcGGAGGAGac -5'
13110 5' -62.5 NC_003401.1 + 118850 0.67 0.541879
Target:  5'- cCCcGUGCgCAUCGCCGcCCUCCUCg- -3'
miRNA:   3'- cGGuCGCG-GUGGUGGCcGGAGGAGac -5'
13110 5' -62.5 NC_003401.1 + 12340 0.67 0.532262
Target:  5'- cGCCAGC-CCACCACCgaaacgcgGGUCUUCg--- -3'
miRNA:   3'- -CGGUCGcGGUGGUGG--------CCGGAGGagac -5'
13110 5' -62.5 NC_003401.1 + 8753 0.67 0.513218
Target:  5'- aGCCGGuCGCCGCCACagGGCg-CCUg-- -3'
miRNA:   3'- -CGGUC-GCGGUGGUGg-CCGgaGGAgac -5'
13110 5' -62.5 NC_003401.1 + 132347 0.67 0.510385
Target:  5'- cGCCGGCccgggcccgcggccGCCGCCcCCGGCCgCCcCg- -3'
miRNA:   3'- -CGGUCG--------------CGGUGGuGGCCGGaGGaGac -5'
13110 5' -62.5 NC_003401.1 + 121947 0.67 0.500991
Target:  5'- gGCUGGCGCgGCCgugccacgcccccuGCCGcGCCUCCcggcCUGu -3'
miRNA:   3'- -CGGUCGCGgUGG--------------UGGC-CGGAGGa---GAC- -5'
13110 5' -62.5 NC_003401.1 + 9368 0.69 0.422892
Target:  5'- cGCCGGCGCC-CUACUGGCCg------ -3'
miRNA:   3'- -CGGUCGCGGuGGUGGCCGGaggagac -5'
13110 5' -62.5 NC_003401.1 + 119527 0.69 0.414387
Target:  5'- cGCCGGCcggucaaaaaGCCACaGCaCGGCCU-CUCUGu -3'
miRNA:   3'- -CGGUCG----------CGGUGgUG-GCCGGAgGAGAC- -5'
13110 5' -62.5 NC_003401.1 + 132584 0.69 0.390327
Target:  5'- gGCCGcCGCCcggcauggcgguccuCCGCCGGCCUCCcCUc -3'
miRNA:   3'- -CGGUcGCGGu--------------GGUGGCCGGAGGaGAc -5'
13110 5' -62.5 NC_003401.1 + 126176 0.7 0.338349
Target:  5'- gGCCAGgGCCaucucgauagcgguaACCACCauGCCUCCgucgCUGa -3'
miRNA:   3'- -CGGUCgCGG---------------UGGUGGc-CGGAGGa---GAC- -5'
13110 5' -62.5 NC_003401.1 + 132296 0.76 0.158313
Target:  5'- gGCCcgcGCGCCgggcGCCGCCGGCCUCCc--- -3'
miRNA:   3'- -CGGu--CGCGG----UGGUGGCCGGAGGagac -5'
13110 5' -62.5 NC_003401.1 + 16185 0.75 0.166316
Target:  5'- aCCGGgGUgGCCAgCGGCCUCCUCc- -3'
miRNA:   3'- cGGUCgCGgUGGUgGCCGGAGGAGac -5'
13110 5' -62.5 NC_003401.1 + 82768 0.74 0.207458
Target:  5'- aCCGGCGCCaACCGgaccaaacuuauucaCGGCCUCCUCg- -3'
miRNA:   3'- cGGUCGCGG-UGGUg--------------GCCGGAGGAGac -5'
13110 5' -62.5 NC_003401.1 + 11694 0.73 0.238618
Target:  5'- -gCAGCGCCucgGCCACCGGCgaaCUCUUCa- -3'
miRNA:   3'- cgGUCGCGG---UGGUGGCCG---GAGGAGac -5'
13110 5' -62.5 NC_003401.1 + 78083 0.71 0.293569
Target:  5'- uGCCGGCGCCGCCACCGcuGCaaCC-Cg- -3'
miRNA:   3'- -CGGUCGCGGUGGUGGC--CGgaGGaGac -5'
13110 5' -62.5 NC_003401.1 + 118727 0.71 0.30025
Target:  5'- gGCC-GCGCCGCUuggcgGCgCGGCUUCCUCc- -3'
miRNA:   3'- -CGGuCGCGGUGG-----UG-GCCGGAGGAGac -5'
13110 5' -62.5 NC_003401.1 + 125740 0.71 0.320994
Target:  5'- aCCaaGGCGCCACUGCUGGCggCCUCg- -3'
miRNA:   3'- cGG--UCGCGGUGGUGGCCGgaGGAGac -5'
13110 5' -62.5 NC_003401.1 + 96039 0.66 0.580864
Target:  5'- gGCCAaC-UCACUaACCGGUCUCCUUUGg -3'
miRNA:   3'- -CGGUcGcGGUGG-UGGCCGGAGGAGAC- -5'
13110 5' -62.5 NC_003401.1 + 23804 0.76 0.136355
Target:  5'- aGCgCGGCGCCACCuGCCGGCCg-CUCg- -3'
miRNA:   3'- -CG-GUCGCGGUGG-UGGCCGGagGAGac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.