miRNA display CGI


Results 1 - 20 of 40 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13110 5' -62.5 NC_003401.1 + 125219 0.72 0.255914
Target:  5'- aCgGGCGCCACC--UGGCCUCC-CUGg -3'
miRNA:   3'- cGgUCGCGGUGGugGCCGGAGGaGAC- -5'
13110 5' -62.5 NC_003401.1 + 119951 0.67 0.513218
Target:  5'- uGCCGcuGCGCCGCCuCCGGCCa------ -3'
miRNA:   3'- -CGGU--CGCGGUGGuGGCCGGaggagac -5'
13110 5' -62.5 NC_003401.1 + 41181 0.67 0.531303
Target:  5'- aGCCAcgGCCGCCGCUcugucaaacugcaGGCCUCUgCUGu -3'
miRNA:   3'- -CGGUcgCGGUGGUGG-------------CCGGAGGaGAC- -5'
13110 5' -62.5 NC_003401.1 + 96039 0.66 0.580864
Target:  5'- gGCCAaC-UCACUaACCGGUCUCCUUUGg -3'
miRNA:   3'- -CGGUcGcGGUGG-UGGCCGGAGGAGAC- -5'
13110 5' -62.5 NC_003401.1 + 118532 0.7 0.350293
Target:  5'- cGUCAGCGUCGCCGCaGGCCgagCCg--- -3'
miRNA:   3'- -CGGUCGCGGUGGUGgCCGGa--GGagac -5'
13110 5' -62.5 NC_003401.1 + 118883 0.7 0.373484
Target:  5'- aGCC-GCGCCGCCAagcggcgCGGCCggUUCUGg -3'
miRNA:   3'- -CGGuCGCGGUGGUg------GCCGGagGAGAC- -5'
13110 5' -62.5 NC_003401.1 + 48842 0.69 0.405987
Target:  5'- -aCAGCGCCGCCuuuACCcaaGCgCUCCUCUc -3'
miRNA:   3'- cgGUCGCGGUGG---UGGc--CG-GAGGAGAc -5'
13110 5' -62.5 NC_003401.1 + 23692 1.09 0.000648
Target:  5'- cGCCAGCGCCACCACCGGCCUCCUCUGc -3'
miRNA:   3'- -CGGUCGCGGUGGUGGCCGGAGGAGAC- -5'
13110 5' -62.5 NC_003401.1 + 23804 0.76 0.136355
Target:  5'- aGCgCGGCGCCACCuGCCGGCCg-CUCg- -3'
miRNA:   3'- -CG-GUCGCGGUGG-UGGCCGGagGAGac -5'
13110 5' -62.5 NC_003401.1 + 132657 0.67 0.513218
Target:  5'- gGCgCGGCGCCGCCGggcUCGGCCggaCCg--- -3'
miRNA:   3'- -CG-GUCGCGGUGGU---GGCCGGa--GGagac -5'
13110 5' -62.5 NC_003401.1 + 27687 0.68 0.485198
Target:  5'- gGCCAGCG-CACaGCCGGCCcCCg--- -3'
miRNA:   3'- -CGGUCGCgGUGgUGGCCGGaGGagac -5'
13110 5' -62.5 NC_003401.1 + 132825 0.69 0.414387
Target:  5'- cGCCgaGGCGCCccggGCC-CCGGCCccCCUCc- -3'
miRNA:   3'- -CGG--UCGCGG----UGGuGGCCGGa-GGAGac -5'
13110 5' -62.5 NC_003401.1 + 73203 0.72 0.268007
Target:  5'- uGCCGGUGUgCGCCACCGucaccaCCUCCUCg- -3'
miRNA:   3'- -CGGUCGCG-GUGGUGGCc-----GGAGGAGac -5'
13110 5' -62.5 NC_003401.1 + 128043 0.67 0.503801
Target:  5'- uGCCAGCaGCUggcGCgCACCGGCacgccugUCCUCg- -3'
miRNA:   3'- -CGGUCG-CGG---UG-GUGGCCGg------AGGAGac -5'
13110 5' -62.5 NC_003401.1 + 132378 0.71 0.30025
Target:  5'- cCCGGCGgCGgCGCCGGCCgggcgCCUCc- -3'
miRNA:   3'- cGGUCGCgGUgGUGGCCGGa----GGAGac -5'
13110 5' -62.5 NC_003401.1 + 89844 0.69 0.414387
Target:  5'- aGCCAGgGaCGCC-CCuGCCUCCUCc- -3'
miRNA:   3'- -CGGUCgCgGUGGuGGcCGGAGGAGac -5'
13110 5' -62.5 NC_003401.1 + 120368 0.67 0.503801
Target:  5'- uGCUAGCGUUuucCCACUGGCCguuaguaUUCUGg -3'
miRNA:   3'- -CGGUCGCGGu--GGUGGCCGGag-----GAGAC- -5'
13110 5' -62.5 NC_003401.1 + 17643 0.67 0.513218
Target:  5'- cGCCGcguccGCGUCGCCGCCGGaaUCCa--- -3'
miRNA:   3'- -CGGU-----CGCGGUGGUGGCCggAGGagac -5'
13110 5' -62.5 NC_003401.1 + 27853 0.7 0.342793
Target:  5'- aGCCGGCgaGCCACCacGCCGGUCUCg---- -3'
miRNA:   3'- -CGGUCG--CGGUGG--UGGCCGGAGgagac -5'
13110 5' -62.5 NC_003401.1 + 30507 0.69 0.389514
Target:  5'- aCCGGCGCCucaACCuGGCCUCgCUcCUGg -3'
miRNA:   3'- cGGUCGCGGuggUGG-CCGGAG-GA-GAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.