Results 1 - 20 of 40 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
13112 | 3' | -53.2 | NC_003401.1 | + | 27342 | 1.09 | 0.004974 |
Target: 5'- aCACGGGUAGAACGGCUAUGGCGAACGu -3' miRNA: 3'- -GUGCCCAUCUUGCCGAUACCGCUUGC- -5' |
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13112 | 3' | -53.2 | NC_003401.1 | + | 14188 | 0.72 | 0.740867 |
Target: 5'- -cCGGGUGcgcGAaucgauuggccgcGCGGCUcUGGCGGGCGg -3' miRNA: 3'- guGCCCAU---CU-------------UGCCGAuACCGCUUGC- -5' |
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13112 | 3' | -53.2 | NC_003401.1 | + | 19443 | 0.71 | 0.761539 |
Target: 5'- cCACGGG-AGuucaaaguAugGGUUGUGGCGAaagGCGa -3' miRNA: 3'- -GUGCCCaUC--------UugCCGAUACCGCU---UGC- -5' |
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13112 | 3' | -53.2 | NC_003401.1 | + | 121934 | 0.69 | 0.87445 |
Target: 5'- gCGCGGGUGcGGCGGCUGgcGCGGcCGu -3' miRNA: 3'- -GUGCCCAUcUUGCCGAUacCGCUuGC- -5' |
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13112 | 3' | -53.2 | NC_003401.1 | + | 27665 | 0.69 | 0.881747 |
Target: 5'- gGCGGGggcUGGAGuugcCGGCUgcGUGGCGAGa- -3' miRNA: 3'- gUGCCC---AUCUU----GCCGA--UACCGCUUgc -5' |
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13112 | 3' | -53.2 | NC_003401.1 | + | 107235 | 0.69 | 0.888812 |
Target: 5'- gCGCGGGUuuGAuGCGGUUGguUGGgGGGCGc -3' miRNA: 3'- -GUGCCCAu-CU-UGCCGAU--ACCgCUUGC- -5' |
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13112 | 3' | -53.2 | NC_003401.1 | + | 23633 | 0.68 | 0.908574 |
Target: 5'- aCACGGGcgccgcGAGCGGCcggcagGUGGCGccGCGc -3' miRNA: 3'- -GUGCCCau----CUUGCCGa-----UACCGCu-UGC- -5' |
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13112 | 3' | -53.2 | NC_003401.1 | + | 132522 | 0.68 | 0.914673 |
Target: 5'- gCGCGGGgcggccgGGGGCGGCggccGCGGGCc -3' miRNA: 3'- -GUGCCCa------UCUUGCCGauacCGCUUGc -5' |
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13112 | 3' | -53.2 | NC_003401.1 | + | 108835 | 0.68 | 0.920523 |
Target: 5'- aACGGGcAGAuccaacGCGuGCUGUGGCaAACa -3' miRNA: 3'- gUGCCCaUCU------UGC-CGAUACCGcUUGc -5' |
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13112 | 3' | -53.2 | NC_003401.1 | + | 117806 | 0.67 | 0.941427 |
Target: 5'- cCAUGGGUGcGAugGGCaccGGCGGcaACa -3' miRNA: 3'- -GUGCCCAU-CUugCCGauaCCGCU--UGc -5' |
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13112 | 3' | -53.2 | NC_003401.1 | + | 74137 | 0.67 | 0.941427 |
Target: 5'- gGCGGGaguuGAGCGGgUGgguuuUGGgGAGCGu -3' miRNA: 3'- gUGCCCau--CUUGCCgAU-----ACCgCUUGC- -5' |
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13112 | 3' | -53.2 | NC_003401.1 | + | 116027 | 0.67 | 0.946032 |
Target: 5'- -cCGGGUgGGGGCGGCUcggcuccgggGUGGCuccggguggGGGCGg -3' miRNA: 3'- guGCCCA-UCUUGCCGA----------UACCG---------CUUGC- -5' |
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13112 | 3' | -53.2 | NC_003401.1 | + | 115676 | 0.67 | 0.946032 |
Target: 5'- -cCGGGUgGGGGCGGCUcggcuccgggGUGGCuccggguggGGGCGg -3' miRNA: 3'- guGCCCA-UCUUGCCGA----------UACCG---------CUUGC- -5' |
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13112 | 3' | -53.2 | NC_003401.1 | + | 115612 | 0.67 | 0.946032 |
Target: 5'- -cCGGGUgGGGGCGGCUcggcuccgggGUGGCuccggguggGGGCGg -3' miRNA: 3'- guGCCCA-UCUUGCCGA----------UACCG---------CUUGC- -5' |
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13112 | 3' | -53.2 | NC_003401.1 | + | 115548 | 0.67 | 0.946032 |
Target: 5'- -cCGGGUgGGGGCGGCUcggcuccgggGUGGCuccggguggGGGCGg -3' miRNA: 3'- guGCCCA-UCUUGCCGA----------UACCG---------CUUGC- -5' |
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13112 | 3' | -53.2 | NC_003401.1 | + | 115484 | 0.67 | 0.946032 |
Target: 5'- -cCGGGUgGGGGCGGCUcggcuccgggGUGGCuccggguggGGGCGg -3' miRNA: 3'- guGCCCA-UCUUGCCGA----------UACCG---------CUUGC- -5' |
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13112 | 3' | -53.2 | NC_003401.1 | + | 115420 | 0.67 | 0.946032 |
Target: 5'- -cCGGGUgGGGGCGGCUcggcuccgggGUGGCuccggguggGGGCGg -3' miRNA: 3'- guGCCCA-UCUUGCCGA----------UACCG---------CUUGC- -5' |
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13112 | 3' | -53.2 | NC_003401.1 | + | 115356 | 0.67 | 0.946032 |
Target: 5'- -cCGGGUgGGGGCGGCUcggcuccgggGUGGCuccggguggGGGCGg -3' miRNA: 3'- guGCCCA-UCUUGCCGA----------UACCG---------CUUGC- -5' |
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13112 | 3' | -53.2 | NC_003401.1 | + | 129060 | 0.67 | 0.946032 |
Target: 5'- --aGGGUGGGAgGGgaauguuagGUGGCGAACc -3' miRNA: 3'- gugCCCAUCUUgCCga-------UACCGCUUGc -5' |
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13112 | 3' | -53.2 | NC_003401.1 | + | 116091 | 0.67 | 0.946032 |
Target: 5'- -cCGGGUgGGGGCGGCUcggcuccgggGUGGCuccggguggGGGCGg -3' miRNA: 3'- guGCCCA-UCUUGCCGA----------UACCG---------CUUGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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