miRNA display CGI


Results 1 - 20 of 40 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13112 3' -53.2 NC_003401.1 + 21 0.67 0.946032
Target:  5'- aGCGGGggacagGGGACGGC-GUGuGCGuGCu -3'
miRNA:   3'- gUGCCCa-----UCUUGCCGaUAC-CGCuUGc -5'
13112 3' -53.2 NC_003401.1 + 14188 0.72 0.740867
Target:  5'- -cCGGGUGcgcGAaucgauuggccgcGCGGCUcUGGCGGGCGg -3'
miRNA:   3'- guGCCCAU---CU-------------UGCCGAuACCGCUUGC- -5'
13112 3' -53.2 NC_003401.1 + 14344 0.66 0.958392
Target:  5'- gGCGGcu-GAACGGCUccGGCGccGGCa -3'
miRNA:   3'- gUGCCcauCUUGCCGAuaCCGC--UUGc -5'
13112 3' -53.2 NC_003401.1 + 14518 0.66 0.95411
Target:  5'- cCugGGGcgaaccgAGGACGGCaccagcgUGUGcGUGAACGu -3'
miRNA:   3'- -GugCCCa------UCUUGCCG-------AUAC-CGCUUGC- -5'
13112 3' -53.2 NC_003401.1 + 19443 0.71 0.761539
Target:  5'- cCACGGG-AGuucaaaguAugGGUUGUGGCGAaagGCGa -3'
miRNA:   3'- -GUGCCCaUC--------UugCCGAUACCGCU---UGC- -5'
13112 3' -53.2 NC_003401.1 + 23633 0.68 0.908574
Target:  5'- aCACGGGcgccgcGAGCGGCcggcagGUGGCGccGCGc -3'
miRNA:   3'- -GUGCCCau----CUUGCCGa-----UACCGCu-UGC- -5'
13112 3' -53.2 NC_003401.1 + 27342 1.09 0.004974
Target:  5'- aCACGGGUAGAACGGCUAUGGCGAACGu -3'
miRNA:   3'- -GUGCCCAUCUUGCCGAUACCGCUUGC- -5'
13112 3' -53.2 NC_003401.1 + 27665 0.69 0.881747
Target:  5'- gGCGGGggcUGGAGuugcCGGCUgcGUGGCGAGa- -3'
miRNA:   3'- gUGCCC---AUCUU----GCCGA--UACCGCUUgc -5'
13112 3' -53.2 NC_003401.1 + 27701 0.66 0.954511
Target:  5'- gGCGuGGUGGcucgcCGGCUGcgggGGCGGugGu -3'
miRNA:   3'- gUGC-CCAUCuu---GCCGAUa---CCGCUugC- -5'
13112 3' -53.2 NC_003401.1 + 42295 0.66 0.959879
Target:  5'- aGCGGGUGGAGCguGGCcgccaccaggGgaucgcuguacagcuUGGUGAACGg -3'
miRNA:   3'- gUGCCCAUCUUG--CCGa---------U---------------ACCGCUUGC- -5'
13112 3' -53.2 NC_003401.1 + 61358 0.67 0.946032
Target:  5'- aCGCGauaGGUucuGuGCGGCUAUGGUGGucGCGc -3'
miRNA:   3'- -GUGC---CCAu--CuUGCCGAUACCGCU--UGC- -5'
13112 3' -53.2 NC_003401.1 + 74137 0.67 0.941427
Target:  5'- gGCGGGaguuGAGCGGgUGgguuuUGGgGAGCGu -3'
miRNA:   3'- gUGCCCau--CUUGCCgAU-----ACCgCUUGC- -5'
13112 3' -53.2 NC_003401.1 + 80782 0.66 0.957635
Target:  5'- aCGCGGGaacGAGCGGUgaagaugaugggGUGGCGuGCu -3'
miRNA:   3'- -GUGCCCau-CUUGCCGa-----------UACCGCuUGc -5'
13112 3' -53.2 NC_003401.1 + 103295 0.66 0.96204
Target:  5'- cCAUGGG---AACGGCgGUGGCcucGGACGg -3'
miRNA:   3'- -GUGCCCaucUUGCCGaUACCG---CUUGC- -5'
13112 3' -53.2 NC_003401.1 + 103349 0.67 0.946032
Target:  5'- cCGCGGuagccGUAGaAACGGcCUGUGGCGuggguAUGg -3'
miRNA:   3'- -GUGCC-----CAUC-UUGCC-GAUACCGCu----UGC- -5'
13112 3' -53.2 NC_003401.1 + 106869 0.66 0.965459
Target:  5'- uGCGGGUuuGGCGGgUucGGUGAGCa -3'
miRNA:   3'- gUGCCCAucUUGCCgAuaCCGCUUGc -5'
13112 3' -53.2 NC_003401.1 + 107235 0.69 0.888812
Target:  5'- gCGCGGGUuuGAuGCGGUUGguUGGgGGGCGc -3'
miRNA:   3'- -GUGCCCAu-CU-UGCCGAU--ACCgCUUGC- -5'
13112 3' -53.2 NC_003401.1 + 108835 0.68 0.920523
Target:  5'- aACGGGcAGAuccaacGCGuGCUGUGGCaAACa -3'
miRNA:   3'- gUGCCCaUCU------UGC-CGAUACCGcUUGc -5'
13112 3' -53.2 NC_003401.1 + 109662 0.66 0.958392
Target:  5'- gACGGGUcacuccGACGGCcucggugcguUGaGGCGAACGg -3'
miRNA:   3'- gUGCCCAuc----UUGCCG----------AUaCCGCUUGC- -5'
13112 3' -53.2 NC_003401.1 + 115292 0.67 0.946032
Target:  5'- -cCGGGUgGGGGCGGCUcggcuccgggGUGGCuccggguggGGGCGg -3'
miRNA:   3'- guGCCCA-UCUUGCCGA----------UACCG---------CUUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.