miRNA display CGI


Results 41 - 60 of 117 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13114 3' -56.1 NC_003401.1 + 73392 0.67 0.85083
Target:  5'- cGGAgCGCCGACgGAUGAggUGUAuuACCACa -3'
miRNA:   3'- -CCU-GCGGCUGgUUGCUg-GCGU--UGGUG- -5'
13114 3' -56.1 NC_003401.1 + 117896 0.67 0.85083
Target:  5'- cGGGCGCgGGgguUCGGCGGCgGUGgcACCGCg -3'
miRNA:   3'- -CCUGCGgCU---GGUUGCUGgCGU--UGGUG- -5'
13114 3' -56.1 NC_003401.1 + 125653 0.67 0.85083
Target:  5'- aGGuCGUCGGuggaGACGGCCGCGACguCg -3'
miRNA:   3'- -CCuGCGGCUgg--UUGCUGGCGUUGguG- -5'
13114 3' -56.1 NC_003401.1 + 10839 0.67 0.842857
Target:  5'- uGACGUCGcuuGCC-GCGGuuGCcGCCACg -3'
miRNA:   3'- cCUGCGGC---UGGuUGCUggCGuUGGUG- -5'
13114 3' -56.1 NC_003401.1 + 119098 0.67 0.842857
Target:  5'- gGGuGCGUuggCGGCC-ACGACCuuGGCCACg -3'
miRNA:   3'- -CC-UGCG---GCUGGuUGCUGGcgUUGGUG- -5'
13114 3' -56.1 NC_003401.1 + 11598 0.67 0.842857
Target:  5'- aGGGCG-CGACC-ACcACCGCGaaGCCAa -3'
miRNA:   3'- -CCUGCgGCUGGuUGcUGGCGU--UGGUg -5'
13114 3' -56.1 NC_003401.1 + 49874 0.67 0.834693
Target:  5'- cGGGCGUcaCGGCCGAaggGACCgaggGCAACcCACu -3'
miRNA:   3'- -CCUGCG--GCUGGUUg--CUGG----CGUUG-GUG- -5'
13114 3' -56.1 NC_003401.1 + 10312 0.67 0.834693
Target:  5'- cGGGCaaaCCGGCCuccaGACCGgGACCGa -3'
miRNA:   3'- -CCUGc--GGCUGGuug-CUGGCgUUGGUg -5'
13114 3' -56.1 NC_003401.1 + 132467 0.67 0.834693
Target:  5'- cGGGC-CCGGCCGACucCCGgGAgCGCc -3'
miRNA:   3'- -CCUGcGGCUGGUUGcuGGCgUUgGUG- -5'
13114 3' -56.1 NC_003401.1 + 103724 0.67 0.834693
Target:  5'- cGGAcgcaaucaacuCGCCGGCCAACG-UCGUGACUc- -3'
miRNA:   3'- -CCU-----------GCGGCUGGUUGCuGGCGUUGGug -5'
13114 3' -56.1 NC_003401.1 + 769 0.67 0.833866
Target:  5'- aGGGCuGCCGGCCAgcugcgugcgaggGCGuCCGagGGCCAg -3'
miRNA:   3'- -CCUG-CGGCUGGU-------------UGCuGGCg-UUGGUg -5'
13114 3' -56.1 NC_003401.1 + 133484 0.67 0.833866
Target:  5'- aGGGCuGCCGGCCAgcugcgugcgaggGCGuCCGagGGCCAg -3'
miRNA:   3'- -CCUG-CGGCUGGU-------------UGCuGGCg-UUGGUg -5'
13114 3' -56.1 NC_003401.1 + 88600 0.68 0.829706
Target:  5'- cGGAUGCC-ACCGGCGGCaugcuccuggacguaCGCAacgagguaACCGCc -3'
miRNA:   3'- -CCUGCGGcUGGUUGCUG---------------GCGU--------UGGUG- -5'
13114 3' -56.1 NC_003401.1 + 58370 0.68 0.826345
Target:  5'- uGGGCGCCGAuuuuacCCAcgcGCGugGCaGCAGCCAa -3'
miRNA:   3'- -CCUGCGGCU------GGU---UGC--UGgCGUUGGUg -5'
13114 3' -56.1 NC_003401.1 + 119523 0.68 0.826345
Target:  5'- cGGACGCCGGCCggUcaaaa-AGCCACa -3'
miRNA:   3'- -CCUGCGGCUGGuuGcuggcgUUGGUG- -5'
13114 3' -56.1 NC_003401.1 + 21828 0.68 0.817822
Target:  5'- uGGGCgggGCCGACCAcaggcGCGGCC-CGGCUg- -3'
miRNA:   3'- -CCUG---CGGCUGGU-----UGCUGGcGUUGGug -5'
13114 3' -56.1 NC_003401.1 + 1478 0.68 0.817822
Target:  5'- gGGACGUcuaCGGCCAGaGACCaGCGAagcaCACa -3'
miRNA:   3'- -CCUGCG---GCUGGUUgCUGG-CGUUg---GUG- -5'
13114 3' -56.1 NC_003401.1 + 13205 0.68 0.817822
Target:  5'- uGGAUGCUGACgGACGcCUGgucCAccGCCACg -3'
miRNA:   3'- -CCUGCGGCUGgUUGCuGGC---GU--UGGUG- -5'
13114 3' -56.1 NC_003401.1 + 50824 0.68 0.812627
Target:  5'- cGGuuGCCGAaaccaguuuucgcaaCCAcCGuCCGUGACCACg -3'
miRNA:   3'- -CCugCGGCU---------------GGUuGCuGGCGUUGGUG- -5'
13114 3' -56.1 NC_003401.1 + 17218 0.68 0.809131
Target:  5'- aGGA-G-CGACCAACggaGACCGCcACCAUg -3'
miRNA:   3'- -CCUgCgGCUGGUUG---CUGGCGuUGGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.