miRNA display CGI


Results 21 - 40 of 117 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13114 3' -56.1 NC_003401.1 + 19787 0.75 0.438391
Target:  5'- aGGGCGCgCGAUCggUGGCCGaggagcuGCCGCa -3'
miRNA:   3'- -CCUGCG-GCUGGuuGCUGGCgu-----UGGUG- -5'
13114 3' -56.1 NC_003401.1 + 20098 0.7 0.684817
Target:  5'- cGGucacCGCgGAgCCAAUGGCCGCGgcguCCGCg -3'
miRNA:   3'- -CCu---GCGgCU-GGUUGCUGGCGUu---GGUG- -5'
13114 3' -56.1 NC_003401.1 + 20269 0.69 0.763452
Target:  5'- gGGACGCgGAC-----GCCGCGGCCAUu -3'
miRNA:   3'- -CCUGCGgCUGguugcUGGCGUUGGUG- -5'
13114 3' -56.1 NC_003401.1 + 20708 0.72 0.593197
Target:  5'- uGGCGuuGACCGGCcGCCGC--CCGCg -3'
miRNA:   3'- cCUGCggCUGGUUGcUGGCGuuGGUG- -5'
13114 3' -56.1 NC_003401.1 + 21169 0.68 0.792185
Target:  5'- -uGCGCCGAUCGugGgGCCGCcuguuaauuagauccACCACg -3'
miRNA:   3'- ccUGCGGCUGGUugC-UGGCGu--------------UGGUG- -5'
13114 3' -56.1 NC_003401.1 + 21615 0.68 0.782134
Target:  5'- uGGuCGCCGcggcacgcgcaGCgGACGGCCGCGGCa-- -3'
miRNA:   3'- -CCuGCGGC-----------UGgUUGCUGGCGUUGgug -5'
13114 3' -56.1 NC_003401.1 + 21828 0.68 0.817822
Target:  5'- uGGGCgggGCCGACCAcaggcGCGGCC-CGGCUg- -3'
miRNA:   3'- -CCUG---CGGCUGGU-----UGCUGGcGUUGGug -5'
13114 3' -56.1 NC_003401.1 + 22793 0.67 0.873543
Target:  5'- uGGACGCCGucaACCGugG-CCGagcACgGCg -3'
miRNA:   3'- -CCUGCGGC---UGGUugCuGGCgu-UGgUG- -5'
13114 3' -56.1 NC_003401.1 + 23533 0.71 0.623753
Target:  5'- -cGCGCgCGACUGGCGACCGUgaaAACUAUg -3'
miRNA:   3'- ccUGCG-GCUGGUUGCUGGCG---UUGGUG- -5'
13114 3' -56.1 NC_003401.1 + 23549 0.67 0.873543
Target:  5'- uGGCGCUGGCgAAgauagUGGCCGCAGagCACg -3'
miRNA:   3'- cCUGCGGCUGgUU-----GCUGGCGUUg-GUG- -5'
13114 3' -56.1 NC_003401.1 + 23636 0.77 0.323763
Target:  5'- cGGGCGCCG-CgAGCGGCCGgCAgguggcGCCGCg -3'
miRNA:   3'- -CCUGCGGCuGgUUGCUGGC-GU------UGGUG- -5'
13114 3' -56.1 NC_003401.1 + 23800 0.67 0.866179
Target:  5'- cGGCGCC-ACCugcCGGCCGCucGCgGCg -3'
miRNA:   3'- cCUGCGGcUGGuu-GCUGGCGu-UGgUG- -5'
13114 3' -56.1 NC_003401.1 + 23979 0.66 0.894323
Target:  5'- uGGcUGCCGccagcguCCAAUGGCCGC-GCCGg -3'
miRNA:   3'- -CCuGCGGCu------GGUUGCUGGCGuUGGUg -5'
13114 3' -56.1 NC_003401.1 + 28032 1.11 0.002119
Target:  5'- aGGACGCCGACCAACGACCGCAACCACc -3'
miRNA:   3'- -CCUGCGGCUGGUUGCUGGCGUUGGUG- -5'
13114 3' -56.1 NC_003401.1 + 28374 0.69 0.753932
Target:  5'- cGAUGCCGG-CAACGGCgGCGuauCCAUc -3'
miRNA:   3'- cCUGCGGCUgGUUGCUGgCGUu--GGUG- -5'
13114 3' -56.1 NC_003401.1 + 41533 0.68 0.782134
Target:  5'- cGGACGCgGGCCuGCG-CC-CcACCACc -3'
miRNA:   3'- -CCUGCGgCUGGuUGCuGGcGuUGGUG- -5'
13114 3' -56.1 NC_003401.1 + 42319 0.67 0.872816
Target:  5'- aGGCGCgucacguaauuugCGACCAGCGgguggagcgugGCCGCcACCAg -3'
miRNA:   3'- cCUGCG-------------GCUGGUUGC-----------UGGCGuUGGUg -5'
13114 3' -56.1 NC_003401.1 + 44995 0.67 0.857068
Target:  5'- aGugGUCGGauuuuaaaucggCAAUGGCgGCAACCACg -3'
miRNA:   3'- cCugCGGCUg-----------GUUGCUGgCGUUGGUG- -5'
13114 3' -56.1 NC_003401.1 + 48428 0.66 0.880691
Target:  5'- aGugGCagcggcaaGAUCcGCGGCCGUuGCCGCu -3'
miRNA:   3'- cCugCGg-------CUGGuUGCUGGCGuUGGUG- -5'
13114 3' -56.1 NC_003401.1 + 48610 0.66 0.887619
Target:  5'- cGGAU-CgGACCAaucuagcggcaACGGCCGCGgaucuuGCCGCu -3'
miRNA:   3'- -CCUGcGgCUGGU-----------UGCUGGCGU------UGGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.