miRNA display CGI


Results 1 - 20 of 117 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13114 3' -56.1 NC_003401.1 + 769 0.67 0.833866
Target:  5'- aGGGCuGCCGGCCAgcugcgugcgaggGCGuCCGagGGCCAg -3'
miRNA:   3'- -CCUG-CGGCUGGU-------------UGCuGGCg-UUGGUg -5'
13114 3' -56.1 NC_003401.1 + 935 0.66 0.880691
Target:  5'- cGGACGCCcucgcACgCAGCuGGCCgGCAGCCc- -3'
miRNA:   3'- -CCUGCGGc----UG-GUUG-CUGG-CGUUGGug -5'
13114 3' -56.1 NC_003401.1 + 1478 0.68 0.817822
Target:  5'- gGGACGUcuaCGGCCAGaGACCaGCGAagcaCACa -3'
miRNA:   3'- -CCUGCG---GCUGGUUgCUGG-CGUUg---GUG- -5'
13114 3' -56.1 NC_003401.1 + 7590 0.66 0.890328
Target:  5'- aGGACGgaaacCCGGCCGACGAgcacCCaaaguacacguacugGCAGCUAUg -3'
miRNA:   3'- -CCUGC-----GGCUGGUUGCU----GG---------------CGUUGGUG- -5'
13114 3' -56.1 NC_003401.1 + 8690 0.68 0.798492
Target:  5'- cGGugGCUuACCuggcagaaauacGCGGCCGC-ACCGCc -3'
miRNA:   3'- -CCugCGGcUGGu-----------UGCUGGCGuUGGUG- -5'
13114 3' -56.1 NC_003401.1 + 8874 0.71 0.623753
Target:  5'- gGGGCGCgG--CGugGACCGCAACCu- -3'
miRNA:   3'- -CCUGCGgCugGUugCUGGCGUUGGug -5'
13114 3' -56.1 NC_003401.1 + 8917 0.66 0.907044
Target:  5'- gGGACGCaggCGcCCugUGGCgGCGACCGg -3'
miRNA:   3'- -CCUGCG---GCuGGuuGCUGgCGUUGGUg -5'
13114 3' -56.1 NC_003401.1 + 10312 0.67 0.834693
Target:  5'- cGGGCaaaCCGGCCuccaGACCGgGACCGa -3'
miRNA:   3'- -CCUGc--GGCUGGuug-CUGGCgUUGGUg -5'
13114 3' -56.1 NC_003401.1 + 10659 0.66 0.894323
Target:  5'- cGGA-GCCacgGACCAccaccgUGGCgGCAACCGCg -3'
miRNA:   3'- -CCUgCGG---CUGGUu-----GCUGgCGUUGGUG- -5'
13114 3' -56.1 NC_003401.1 + 10839 0.67 0.842857
Target:  5'- uGACGUCGcuuGCC-GCGGuuGCcGCCACg -3'
miRNA:   3'- cCUGCGGC---UGGuUGCUggCGuUGGUG- -5'
13114 3' -56.1 NC_003401.1 + 11598 0.67 0.842857
Target:  5'- aGGGCG-CGACC-ACcACCGCGaaGCCAa -3'
miRNA:   3'- -CCUGCgGCUGGuUGcUGGCGU--UGGUg -5'
13114 3' -56.1 NC_003401.1 + 11841 0.66 0.880691
Target:  5'- aGGugGCCaccucgguGACCgucuaucgaggGugGACCGaGACCGCc -3'
miRNA:   3'- -CCugCGG--------CUGG-----------UugCUGGCgUUGGUG- -5'
13114 3' -56.1 NC_003401.1 + 12435 0.72 0.583059
Target:  5'- cGGGCGCCGagGCCGuuuuCGGuuuucuCCGCGACCGa -3'
miRNA:   3'- -CCUGCGGC--UGGUu---GCU------GGCGUUGGUg -5'
13114 3' -56.1 NC_003401.1 + 13205 0.68 0.817822
Target:  5'- uGGAUGCUGACgGACGcCUGgucCAccGCCACg -3'
miRNA:   3'- -CCUGCGGCUGgUUGCuGGC---GU--UGGUG- -5'
13114 3' -56.1 NC_003401.1 + 13489 0.7 0.674698
Target:  5'- uGGACaacaCGAUCGACcugaACCGCGACCGCc -3'
miRNA:   3'- -CCUGcg--GCUGGUUGc---UGGCGUUGGUG- -5'
13114 3' -56.1 NC_003401.1 + 14025 0.68 0.809131
Target:  5'- aGGGCGCUGACCucuGCuGuuCGUcuAACCGCc -3'
miRNA:   3'- -CCUGCGGCUGGu--UG-CugGCG--UUGGUG- -5'
13114 3' -56.1 NC_003401.1 + 14215 0.66 0.893663
Target:  5'- gGGGCGCUagagggugucgggGACCGGCcggGugCGCGaaucgauugGCCGCg -3'
miRNA:   3'- -CCUGCGG-------------CUGGUUG---CugGCGU---------UGGUG- -5'
13114 3' -56.1 NC_003401.1 + 17175 0.71 0.623753
Target:  5'- aGACGCCGcGCCAGCGGaguCCGCAgggagagcucgaGCgGCg -3'
miRNA:   3'- cCUGCGGC-UGGUUGCU---GGCGU------------UGgUG- -5'
13114 3' -56.1 NC_003401.1 + 17218 0.68 0.809131
Target:  5'- aGGA-G-CGACCAACggaGACCGCcACCAUg -3'
miRNA:   3'- -CCUgCgGCUGGUUG---CUGGCGuUGGUG- -5'
13114 3' -56.1 NC_003401.1 + 18019 0.67 0.853965
Target:  5'- cGGAC-CCGuccugcccacccacACCGGCGGCCGCGuauugggggucuacGCCGa -3'
miRNA:   3'- -CCUGcGGC--------------UGGUUGCUGGCGU--------------UGGUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.