miRNA display CGI


Results 1 - 20 of 117 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13114 3' -56.1 NC_003401.1 + 28032 1.11 0.002119
Target:  5'- aGGACGCCGACCAACGACCGCAACCACc -3'
miRNA:   3'- -CCUGCGGCUGGUUGCUGGCGUUGGUG- -5'
13114 3' -56.1 NC_003401.1 + 132219 0.81 0.18669
Target:  5'- aGGCGcCCGGCCGGCGccgccgccggGCCGCGGCCGCc -3'
miRNA:   3'- cCUGC-GGCUGGUUGC----------UGGCGUUGGUG- -5'
13114 3' -56.1 NC_003401.1 + 103096 0.79 0.250463
Target:  5'- cGGACGCUGAUCAcccaauucaACGGCCacgaGCGACCGCc -3'
miRNA:   3'- -CCUGCGGCUGGU---------UGCUGG----CGUUGGUG- -5'
13114 3' -56.1 NC_003401.1 + 23636 0.77 0.323763
Target:  5'- cGGGCGCCG-CgAGCGGCCGgCAgguggcGCCGCg -3'
miRNA:   3'- -CCUGCGGCuGgUUGCUGGC-GU------UGGUG- -5'
13114 3' -56.1 NC_003401.1 + 94389 0.76 0.370032
Target:  5'- uGGCGCUGauGCCAACGGCCGgAACCu- -3'
miRNA:   3'- cCUGCGGC--UGGUUGCUGGCgUUGGug -5'
13114 3' -56.1 NC_003401.1 + 132753 0.76 0.394803
Target:  5'- gGGAgGCCGGCgGAgGACCGCcaugccgggcgcGGCCGCc -3'
miRNA:   3'- -CCUgCGGCUGgUUgCUGGCG------------UUGGUG- -5'
13114 3' -56.1 NC_003401.1 + 82386 0.75 0.411902
Target:  5'- uGGCGCaCGACag--GACCGCAACCGCc -3'
miRNA:   3'- cCUGCG-GCUGguugCUGGCGUUGGUG- -5'
13114 3' -56.1 NC_003401.1 + 132524 0.75 0.429452
Target:  5'- cGGCGCggggCGGCCGGgGGCgGCGGCCGCg -3'
miRNA:   3'- cCUGCG----GCUGGUUgCUGgCGUUGGUG- -5'
13114 3' -56.1 NC_003401.1 + 19787 0.75 0.438391
Target:  5'- aGGGCGCgCGAUCggUGGCCGaggagcuGCCGCa -3'
miRNA:   3'- -CCUGCG-GCUGGuuGCUGGCgu-----UGGUG- -5'
13114 3' -56.1 NC_003401.1 + 108828 0.74 0.47517
Target:  5'- uGGCGCCGACCGuccCGugCgGCAACC-Cg -3'
miRNA:   3'- cCUGCGGCUGGUu--GCugG-CGUUGGuG- -5'
13114 3' -56.1 NC_003401.1 + 132346 0.73 0.542922
Target:  5'- --cCGCCGGCCcGgGcCCGCGGCCGCc -3'
miRNA:   3'- ccuGCGGCUGGuUgCuGGCGUUGGUG- -5'
13114 3' -56.1 NC_003401.1 + 117763 0.73 0.552881
Target:  5'- -cGCGgCGGCCAugGucGCCGCGGCCGu -3'
miRNA:   3'- ccUGCgGCUGGUugC--UGGCGUUGGUg -5'
13114 3' -56.1 NC_003401.1 + 122098 0.72 0.562894
Target:  5'- uGGcACgGCCGcGCCAGCcGCCGCAcCCGCg -3'
miRNA:   3'- -CC-UG-CGGC-UGGUUGcUGGCGUuGGUG- -5'
13114 3' -56.1 NC_003401.1 + 12435 0.72 0.583059
Target:  5'- cGGGCGCCGagGCCGuuuuCGGuuuucuCCGCGACCGa -3'
miRNA:   3'- -CCUGCGGC--UGGUu---GCU------GGCGUUGGUg -5'
13114 3' -56.1 NC_003401.1 + 78065 0.72 0.583059
Target:  5'- cGugGCCguauGugCGuCGACCGCGGCCAg -3'
miRNA:   3'- cCugCGG----CugGUuGCUGGCGUUGGUg -5'
13114 3' -56.1 NC_003401.1 + 20708 0.72 0.593197
Target:  5'- uGGCGuuGACCGGCcGCCGC--CCGCg -3'
miRNA:   3'- cCUGCggCUGGUUGcUGGCGuuGGUG- -5'
13114 3' -56.1 NC_003401.1 + 132370 0.72 0.612532
Target:  5'- cGGCGCCGGCCgGGCGccuccggGCC-CGGCCGCu -3'
miRNA:   3'- cCUGCGGCUGG-UUGC-------UGGcGUUGGUG- -5'
13114 3' -56.1 NC_003401.1 + 119731 0.72 0.613551
Target:  5'- uGGugGCa-ACCGAcuCGGCgGCGGCCGCg -3'
miRNA:   3'- -CCugCGgcUGGUU--GCUGgCGUUGGUG- -5'
13114 3' -56.1 NC_003401.1 + 8874 0.71 0.623753
Target:  5'- gGGGCGCgG--CGugGACCGCAACCu- -3'
miRNA:   3'- -CCUGCGgCugGUugCUGGCGUUGGug -5'
13114 3' -56.1 NC_003401.1 + 17175 0.71 0.623753
Target:  5'- aGACGCCGcGCCAGCGGaguCCGCAgggagagcucgaGCgGCg -3'
miRNA:   3'- cCUGCGGC-UGGUUGCU---GGCGU------------UGgUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.