miRNA display CGI


Results 1 - 20 of 117 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13114 3' -56.1 NC_003401.1 + 133650 0.66 0.880691
Target:  5'- cGGACGCCcucgcACgCAGCuGGCCgGCAGCCc- -3'
miRNA:   3'- -CCUGCGGc----UG-GUUG-CUGG-CGUUGGug -5'
13114 3' -56.1 NC_003401.1 + 128310 0.66 0.894323
Target:  5'- -uACGCCG-UCAugGcCCGCAggaGCUACa -3'
miRNA:   3'- ccUGCGGCuGGUugCuGGCGU---UGGUG- -5'
13114 3' -56.1 NC_003401.1 + 14215 0.66 0.893663
Target:  5'- gGGGCGCUagagggugucgggGACCGGCcggGugCGCGaaucgauugGCCGCg -3'
miRNA:   3'- -CCUGCGG-------------CUGGUUG---CugGCGU---------UGGUG- -5'
13114 3' -56.1 NC_003401.1 + 72072 0.66 0.907044
Target:  5'- -uAUG-CGACCAAaauUGACCGCAaagaauACCACg -3'
miRNA:   3'- ccUGCgGCUGGUU---GCUGGCGU------UGGUG- -5'
13114 3' -56.1 NC_003401.1 + 48610 0.66 0.887619
Target:  5'- cGGAU-CgGACCAaucuagcggcaACGGCCGCGgaucuuGCCGCu -3'
miRNA:   3'- -CCUGcGgCUGGU-----------UGCUGGCGU------UGGUG- -5'
13114 3' -56.1 NC_003401.1 + 10659 0.66 0.894323
Target:  5'- cGGA-GCCacgGACCAccaccgUGGCgGCAACCGCg -3'
miRNA:   3'- -CCUgCGG---CUGGUu-----GCUGgCGUUGGUG- -5'
13114 3' -56.1 NC_003401.1 + 125259 0.66 0.880691
Target:  5'- --cCGUCuGCCAAcuCGGCCGUGGCCGCc -3'
miRNA:   3'- ccuGCGGcUGGUU--GCUGGCGUUGGUG- -5'
13114 3' -56.1 NC_003401.1 + 118106 0.66 0.886936
Target:  5'- uGGGgGCCGcgcgccACCAugGGCCcCAgauuuggGCCGCg -3'
miRNA:   3'- -CCUgCGGC------UGGUugCUGGcGU-------UGGUG- -5'
13114 3' -56.1 NC_003401.1 + 100150 0.66 0.90643
Target:  5'- ---aGCUuuaucaaGACCAACGAguggaCCGCGGCCAUc -3'
miRNA:   3'- ccugCGG-------CUGGUUGCU-----GGCGUUGGUG- -5'
13114 3' -56.1 NC_003401.1 + 8917 0.66 0.907044
Target:  5'- gGGACGCaggCGcCCugUGGCgGCGACCGg -3'
miRNA:   3'- -CCUGCG---GCuGGuuGCUGgCGUUGGUg -5'
13114 3' -56.1 NC_003401.1 + 48428 0.66 0.880691
Target:  5'- aGugGCagcggcaaGAUCcGCGGCCGUuGCCGCu -3'
miRNA:   3'- cCugCGg-------CUGGuUGCUGGCGuUGGUG- -5'
13114 3' -56.1 NC_003401.1 + 96552 0.66 0.880691
Target:  5'- uGugGaCCGuuugaACCAACGGCC-CGACCGg -3'
miRNA:   3'- cCugC-GGC-----UGGUUGCUGGcGUUGGUg -5'
13114 3' -56.1 NC_003401.1 + 125077 0.66 0.880691
Target:  5'- uGGCGcCCGuCCggUGACgugaugGCGGCCACg -3'
miRNA:   3'- cCUGC-GGCuGGuuGCUGg-----CGUUGGUG- -5'
13114 3' -56.1 NC_003401.1 + 935 0.66 0.880691
Target:  5'- cGGACGCCcucgcACgCAGCuGGCCgGCAGCCc- -3'
miRNA:   3'- -CCUGCGGc----UG-GUUG-CUGG-CGUUGGug -5'
13114 3' -56.1 NC_003401.1 + 100786 0.66 0.880691
Target:  5'- uGACGUCacauCCGGCGAUCGCGGCgGg -3'
miRNA:   3'- cCUGCGGcu--GGUUGCUGGCGUUGgUg -5'
13114 3' -56.1 NC_003401.1 + 7590 0.66 0.890328
Target:  5'- aGGACGgaaacCCGGCCGACGAgcacCCaaaguacacguacugGCAGCUAUg -3'
miRNA:   3'- -CCUGC-----GGCUGGUUGCU----GG---------------CGUUGGUG- -5'
13114 3' -56.1 NC_003401.1 + 119226 0.66 0.900799
Target:  5'- aGGugGgUGACUgguuGCGcCUGCGACCAa -3'
miRNA:   3'- -CCugCgGCUGGu---UGCuGGCGUUGGUg -5'
13114 3' -56.1 NC_003401.1 + 61177 0.66 0.900799
Target:  5'- --cUGCCuGAUC-ACGGgCGCGACCACc -3'
miRNA:   3'- ccuGCGG-CUGGuUGCUgGCGUUGGUG- -5'
13114 3' -56.1 NC_003401.1 + 11841 0.66 0.880691
Target:  5'- aGGugGCCaccucgguGACCgucuaucgaggGugGACCGaGACCGCc -3'
miRNA:   3'- -CCugCGG--------CUGG-----------UugCUGGCgUUGGUG- -5'
13114 3' -56.1 NC_003401.1 + 72478 0.66 0.907044
Target:  5'- -cGCGCgucaCGGCCu-UGGCCGUGGCCGCc -3'
miRNA:   3'- ccUGCG----GCUGGuuGCUGGCGUUGGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.