Results 1 - 20 of 117 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
13114 | 3' | -56.1 | NC_003401.1 | + | 118211 | 0.69 | 0.772855 |
Target: 5'- cGGGCGCUGGgggugauauguuCUGAUGACCGCcGCCu- -3' miRNA: 3'- -CCUGCGGCU------------GGUUGCUGGCGuUGGug -5' |
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13114 | 3' | -56.1 | NC_003401.1 | + | 105210 | 0.7 | 0.694892 |
Target: 5'- uGugGCCcACCcuGGCGGCCGCAAUCu- -3' miRNA: 3'- cCugCGGcUGG--UUGCUGGCGUUGGug -5' |
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13114 | 3' | -56.1 | NC_003401.1 | + | 118395 | 0.7 | 0.714877 |
Target: 5'- uGACGCCGGCgGguuCGACC-CAuugACCGCa -3' miRNA: 3'- cCUGCGGCUGgUu--GCUGGcGU---UGGUG- -5' |
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13114 | 3' | -56.1 | NC_003401.1 | + | 118430 | 0.7 | 0.714877 |
Target: 5'- cGGugGCCGGgCAGaGGCCGgcCGGCCAa -3' miRNA: 3'- -CCugCGGCUgGUUgCUGGC--GUUGGUg -5' |
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13114 | 3' | -56.1 | NC_003401.1 | + | 85510 | 0.7 | 0.724769 |
Target: 5'- uGGAuCGCCGGCaGAUGG-CGCAGCaCACg -3' miRNA: 3'- -CCU-GCGGCUGgUUGCUgGCGUUG-GUG- -5' |
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13114 | 3' | -56.1 | NC_003401.1 | + | 78086 | 0.69 | 0.744306 |
Target: 5'- cGGCGCCG-CCAcCG-CUGCAACC-Cg -3' miRNA: 3'- cCUGCGGCuGGUuGCuGGCGUUGGuG- -5' |
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13114 | 3' | -56.1 | NC_003401.1 | + | 90732 | 0.69 | 0.753932 |
Target: 5'- aGGCGUCGucagGCCAACaGAcagcguacCCGCGGCCGCc -3' miRNA: 3'- cCUGCGGC----UGGUUG-CU--------GGCGUUGGUG- -5' |
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13114 | 3' | -56.1 | NC_003401.1 | + | 126454 | 0.69 | 0.763452 |
Target: 5'- cGGugGCCGugaUGACGACUGCGuuaaACgGCa -3' miRNA: 3'- -CCugCGGCug-GUUGCUGGCGU----UGgUG- -5' |
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13114 | 3' | -56.1 | NC_003401.1 | + | 69365 | 0.69 | 0.772855 |
Target: 5'- cGGGCGUCGAuugcgggaaaCCAgcauGCGuuCCGCAGCCcGCg -3' miRNA: 3'- -CCUGCGGCU----------GGU----UGCu-GGCGUUGG-UG- -5' |
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13114 | 3' | -56.1 | NC_003401.1 | + | 20098 | 0.7 | 0.684817 |
Target: 5'- cGGucacCGCgGAgCCAAUGGCCGCGgcguCCGCg -3' miRNA: 3'- -CCu---GCGgCU-GGUUGCUGGCGUu---GGUG- -5' |
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13114 | 3' | -56.1 | NC_003401.1 | + | 13489 | 0.7 | 0.674698 |
Target: 5'- uGGACaacaCGAUCGACcugaACCGCGACCGCc -3' miRNA: 3'- -CCUGcg--GCUGGUUGc---UGGCGUUGGUG- -5' |
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13114 | 3' | -56.1 | NC_003401.1 | + | 101700 | 0.71 | 0.664544 |
Target: 5'- cGGGCGCUGAagGAacaGAUCGCcAACCACc -3' miRNA: 3'- -CCUGCGGCUggUUg--CUGGCG-UUGGUG- -5' |
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13114 | 3' | -56.1 | NC_003401.1 | + | 103096 | 0.79 | 0.250463 |
Target: 5'- cGGACGCUGAUCAcccaauucaACGGCCacgaGCGACCGCc -3' miRNA: 3'- -CCUGCGGCUGGU---------UGCUGG----CGUUGGUG- -5' |
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13114 | 3' | -56.1 | NC_003401.1 | + | 23636 | 0.77 | 0.323763 |
Target: 5'- cGGGCGCCG-CgAGCGGCCGgCAgguggcGCCGCg -3' miRNA: 3'- -CCUGCGGCuGgUUGCUGGC-GU------UGGUG- -5' |
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13114 | 3' | -56.1 | NC_003401.1 | + | 82386 | 0.75 | 0.411902 |
Target: 5'- uGGCGCaCGACag--GACCGCAACCGCc -3' miRNA: 3'- cCUGCG-GCUGguugCUGGCGUUGGUG- -5' |
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13114 | 3' | -56.1 | NC_003401.1 | + | 132346 | 0.73 | 0.542922 |
Target: 5'- --cCGCCGGCCcGgGcCCGCGGCCGCc -3' miRNA: 3'- ccuGCGGCUGGuUgCuGGCGUUGGUG- -5' |
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13114 | 3' | -56.1 | NC_003401.1 | + | 119731 | 0.72 | 0.613551 |
Target: 5'- uGGugGCa-ACCGAcuCGGCgGCGGCCGCg -3' miRNA: 3'- -CCugCGgcUGGUU--GCUGgCGUUGGUG- -5' |
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13114 | 3' | -56.1 | NC_003401.1 | + | 17175 | 0.71 | 0.623753 |
Target: 5'- aGACGCCGcGCCAGCGGaguCCGCAgggagagcucgaGCgGCg -3' miRNA: 3'- cCUGCGGC-UGGUUGCU---GGCGU------------UGgUG- -5' |
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13114 | 3' | -56.1 | NC_003401.1 | + | 8874 | 0.71 | 0.623753 |
Target: 5'- gGGGCGCgG--CGugGACCGCAACCu- -3' miRNA: 3'- -CCUGCGgCugGUugCUGGCGUUGGug -5' |
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13114 | 3' | -56.1 | NC_003401.1 | + | 117605 | 0.71 | 0.654365 |
Target: 5'- cGGccGCGgCGACCAAUGGCCGCcGCgGg -3' miRNA: 3'- -CC--UGCgGCUGGUUGCUGGCGuUGgUg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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